View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_8 (Length: 583)
Name: NF12977_low_8
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 80 - 564
Target Start/End: Complemental strand, 11906651 - 11906161
Alignment:
| Q |
80 |
tgttatctaatgttacacagttaaatgtatgatgcaattaagctcaaattttgggaataatatatatgaataatggtgatagtgatacttatgatccttt |
179 |
Q |
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| T |
11906651 |
tgttacctaatgttacacagttaaatctatgatgcaattaagctcaaattttgggaataatatatatgaataatggtgatagtgatacttatgatccttt |
11906552 |
T |
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| Q |
180 |
attcttcttacatgcttagatgtgtatagctcaagcatcaaatttaaaaaattaatttacttgattaatgtaggaagttcagctgtaaaaaataaatgag |
279 |
Q |
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| T |
11906551 |
attcttcttacatgcttagatgtgtatagctcaagcatcaaatttaaaaaattaatttacttgattaatgtaggaagttcagctgtaaaaaataaatgag |
11906452 |
T |
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| Q |
280 |
attcttggagaaacctattaaaagattgggtacata--ttgaagccctgagggctgaggtacatttagctccagtagttttaagtttttctttatctctt |
377 |
Q |
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| T |
11906451 |
attcttggagatacctattaaaagattgggtacatattttgaagccctgagggctgaggtacatttagctccagtagttttaagtttttctttatctctt |
11906352 |
T |
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| Q |
378 |
aatagtttgatatgatttacttattttatatcttaatatgcaatgatcaatattatggtggtatggtatatca----ataggtgagagaaattgaatgtg |
473 |
Q |
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| T |
11906351 |
aatagtttgatatgatttacttattttatatcttaatatgcaatgatcaatattatggtggtatggtatatcaatatataggtgagagaaattgaatgtg |
11906252 |
T |
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| Q |
474 |
attttttattgctagtatttctttttcaaaacagaaggtgcagtactataaatctcagtaaacagaaaagaaatatcatacatgaccatct |
564 |
Q |
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| T |
11906251 |
attttttattgctagtatttcttttttaaaacagaaggtgcagtactacaaatctcaataaacagaaaagaaatatcatacatgaccatct |
11906161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 11906721 - 11906681
Alignment:
| Q |
10 |
ataattctaggattaaaatacaccattttcaacttttattg |
50 |
Q |
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| T |
11906721 |
ataattctaggattaaaatacaccattttcaacttttattg |
11906681 |
T |
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