View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12978_high_14 (Length: 361)
Name: NF12978_high_14
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_high_14 |
 | |
|
| [»] scaffold0913 (1 HSPs) |
| | |
|
| [»] scaffold0898 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 32922561 - 32922895
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32922561 |
aagaatattatcttcaaagcattacacgatttatctaaggaagatgtgcctttattttgttgtgtgttgtggagtatttgaaaacaaagaaacaatagag |
32922660 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
32922661 |
tatgaaatgaggtagttgatgcttaagtatatgttgtggagagagtaaaatctatgtttcatgattggtaagatgcatgtaagatttgtaatacatcatg |
32922760 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32922761 |
tgcacaaccgcgacaagtaggaaatgtgaaatggatcaaaccaactgaaggaatatttaagtgcaatattgatgcttctttctcccatctttataataga |
32922860 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatgatgtagg |
344 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
32922861 |
ctgggaataagagtttgtataagggatgatgtagg |
32922895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 180 - 339
Target Start/End: Original strand, 44021851 - 44022010
Alignment:
| Q |
180 |
agatgcacgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatatt |
279 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||| | ||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
44021851 |
agatgcacgtaggatttgtaatacatcttgtgcacaaccgctgcaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatatt |
44021950 |
T |
|
| Q |
280 |
gatgcttctttcttccatctttataatagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
44021951 |
gatgcttctttcttccagctttctaataaagtgggaataggagtttgtataatggatgat |
44022010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 42131576 - 42131842
Alignment:
| Q |
13 |
aatattatcttcaaatcattacacgatttatctcaggaa-gatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagta |
111 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||| || || |||| | |||||||||| | ||||||||||| ||| ||||||||||||||||| | ||| |
|
|
| T |
42131576 |
aatattattttcaaagtattacatgatttatctaagaaaagatggggctttattttgatgtgtgttgtggaatatgtggaaacaaagaaacaacaaagtg |
42131675 |
T |
|
| Q |
112 |
tgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtg |
211 |
Q |
| |
|
|| ||||||||| ||||| || || | | |||||| ||||||| |||| ||||| ||||||||||||| |||||||| | |||| |||||||| |||| |
|
|
| T |
42131676 |
tggaatgaggtaattgatactcaattttatgttgtggagagagcaaaaactatgcttcatgattggca---tgcacgtaggttttgcaatacatcttgtg |
42131772 |
T |
|
| Q |
212 |
cacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattga |
281 |
Q |
| |
|
||||||||||||||| ||||||| | |||| ||||||||||||| || || |||||||||||||||||| |
|
|
| T |
42131773 |
cacaaccgcgacaagaaggaaatgtgaaatagatcaaaccagctaaaagaggatttaagtgcaatattga |
42131842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 24428243 - 24428069
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| ||||||||| | |||||||||||| |||||||||||||| || |||||||||||||||| || |
|
|
| T |
24428243 |
aagaatattattttcaaagcattacatgatttatctaaggaagatgcggctttattttgtt--gtgttgtggagtatctgaaaacaaagaaacaataaag |
24428146 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgca |
186 |
Q |
| |
|
| || |||||||||||||||||| |||| | |||||| |||||| |||| ||||| ||||||| | ||||||||| |
|
|
| T |
24428145 |
tgtggaatgaggtagttgatgctaaagtttatgttgtggagagaataaaagctatgcttcatgactaacaagatgca |
24428069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 336
Target Start/End: Original strand, 43896038 - 43896248
Alignment:
| Q |
125 |
ttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaaccgcgaca |
224 |
Q |
| |
|
|||||||| |||| | |||||||||||| |||| ||| |||||||||| ||||||||| ||| ||| ||||||||||| ||||| | |||||||| |
|
|
| T |
43896038 |
ttgatgctaaagtttatgttgttgagagcacaaaagctacacttcatgattgacaagatgcatgtaggatatgtaatacatctcgtgcatagccgcgaca |
43896137 |
T |
|
| Q |
225 |
agtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatagagtgggaataggagtt |
324 |
Q |
| |
|
|| | ||||| | |||||||||||| ||||||| | | |||||||||| ||||||||| || ||||| ||| |||| |||||| |||| |||| ||| | |
|
|
| T |
43896138 |
agaaagaaatgttaaatggatcaaagcagctgaggggagatttaagtgctatattgatg-ttttttctcccagctttctaatagggtggaaatatgaggt |
43896236 |
T |
|
| Q |
325 |
tgtataagggat |
336 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43896237 |
tgtataagggat |
43896248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 30939993 - 30939905
Alignment:
| Q |
251 |
cagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||||| ||| |||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
30939993 |
cagctgaaagaagatttaagtgcaatattgatacttctttctcccagctttcaaataaagtgggaataagagtttgtataagggatgat |
30939905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 32109891 - 32109995
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| ||||||||| ||||| ||||| |||||||| | |||| | ||||||||||||||| ||| |
|
|
| T |
32109891 |
aagaatattatcttcaaagcattacaagatttatccaaggaagatgcaactttaatttgt--tgtgttgtagtgtatctagaaacaaagaaacaaccgag |
32109988 |
T |
|
| Q |
110 |
tatgaaa |
116 |
Q |
| |
|
||||||| |
|
|
| T |
32109989 |
tatgaaa |
32109995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 39220485 - 39220535
Alignment:
| Q |
79 |
tggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttgat |
129 |
Q |
| |
|
||||||||||||||||||||| |||||| || || ||||||||||||||| |
|
|
| T |
39220485 |
tggagtatttggaaacaaagatacaataaggtttggaatgaggtagttgat |
39220535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 42131846 - 42131887
Alignment:
| Q |
298 |
ctttataatagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
42131846 |
ctttctaatagagtgggaacatgagtttgtataagggatgat |
42131887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 5848620 - 5848949
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| | || |||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
5848620 |
aagaatattatcttcaaagcattacatgatttatctaatgacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacagag |
5848719 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| |||||||||||| |||||||| ||| | |||||| ||||||| |||| |||| ||||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
5848720 |
tgtgaaatgaggtaattgatgctccagtttatgttgtcgagagagcaaaagttatgcttcatgattggcaagatgcacataggatttgtaatacatcttg |
5848819 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
5848820 |
tgcacatttgcgacaagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaataga |
5848919 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
5848920 |
gtgggaataggagtttgtataagagatgat |
5848949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 29 - 339
Target Start/End: Complemental strand, 18580129 - 18579820
Alignment:
| Q |
29 |
cattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttga |
128 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||| | ||| || | ||||||| |||| |
|
|
| T |
18580129 |
cattacaagatttatctaaggaagatgtggctttattttgttatgtgttgtggagtatatgcaaacaaagaatcaacaaagtgtggagtgaggtaattga |
18580030 |
T |
|
| Q |
129 |
tgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgta-atacatcatgtgcacaaccgcgacaagt |
227 |
Q |
| |
|
| || |||| | |||||| ||| | |||| | |||| |||||||||||||||||||||||| | || ||| ||||||| ||| |||| ||||||||| |
|
|
| T |
18580029 |
tactcaagtttatgttgtggagc-acaaaagt-tatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgttcacagtcgcgacaaga |
18579932 |
T |
|
| Q |
228 |
aggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatagagtgggaataggagtttgt |
327 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||| |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
18579931 |
aggaaatgtgaaatggatcaaaccagcgaaaggaagatttaaatgcaatattgatgcttctttctcccagctttctaatagagtgggaataggagtttgt |
18579832 |
T |
|
| Q |
328 |
ataagggatgat |
339 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18579831 |
ataagggatgat |
18579820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 33171525 - 33171198
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||| ||||||||||| ||| ||||| | ||||||||||||||| || |||||||||| ||| | || |
|
|
| T |
33171525 |
aagaatattatcttcaaagccttacatgatttatctaaggaagatgtggttttgttttgctgtgtgttgtggagtatctgaaaacaaagaagcaaca-ag |
33171427 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || |||| |||| ||||| || || | | |||||||||||||| |||| |||||||||||| ||| |||||||| | || ||||| ||||||| | || |
|
|
| T |
33171426 |
tgtggaatggggtaattgatactcaactttatgttgttgagagagtaaaaactatgtttcatggttgacaagatgctcataggatttataatacaacttg |
33171327 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||| |||||||||||| | | |||| ||| | ||||||||| || || ||||||||||| ||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
33171326 |
tgcataaccgcgacaagacgaatatttgaaacgaatcaaaccaactaaagaaatatttaagtacaatattgatgtttctttctcccatctttctaataga |
33171227 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatga |
338 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
33171226 |
gtggtaataggagtttgtataagggatga |
33171198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 15746191 - 15745859
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatt---tatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaata |
106 |
Q |
| |
|
||||||||||| |||||| || |||| |||| ||||| | ||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
15746191 |
aagaatattattttcaaagcagtacatgattatttatctaatgaagatgcaactttattttgttgtgtgttgtggaatatatggaaacaaagaaacaaca |
15746092 |
T |
|
| Q |
107 |
gagtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatc |
206 |
Q |
| |
|
|| | ||||||||| ||||| | ||| | |||||||||||||| |||| |||||||||||| ||||||||||||||||| | || ||||||| || |
|
|
| T |
15746091 |
acgtgtagaatgaggtaattgatattaaagcctatgttgttgagagagcaaaaactatgtttcatgcttggcaagatgcacgtaggtttcgtaatacttc |
15745992 |
T |
|
| Q |
207 |
atgtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccat-ctttataa |
305 |
Q |
| |
|
|||||||| |||||||| ||||||| | |||||||||||||||| |||| | | ||||||||||||||||||||||| |||| || || |||| ||| |
|
|
| T |
15745991 |
ttgtgcacagttgcgacaagaaggaaatgtgaaatggatcaaaccagttgaagggagatttaagtgcaatattgatgcttttttc-tctatgctttctaa |
15745893 |
T |
|
| Q |
306 |
tagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |
|
|
| T |
15745892 |
tagagtgggaataggagtctgtataagagatgat |
15745859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 40492694 - 40492516
Alignment:
| Q |
75 |
gttgtggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgat |
174 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||| ||| ||||||| |||||||| | | | |||||| |||||||| ||| |||| || ||||| |
|
|
| T |
40492694 |
gttgtggagtatatgaaaacaaagaaacaacaga--atg---tgaggtaattgatgctccattttatgttgtggagagagagaaaattatgcttaatgat |
40492600 |
T |
|
| Q |
175 |
tggcaagatgcacgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaa |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | |||||||| ||| |||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
40492599 |
tggcaagatgcacgtaggatttgtaatacaccttgtgcacatccgtgacaagaaggaaatgtgaaatggatcaaaccagctgaa |
40492516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 279
Target Start/End: Original strand, 5509637 - 5509872
Alignment:
| Q |
38 |
atttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttgatgcttaagt |
137 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||| ||||||||| ||||| || ||||||||||||| ||||| || ||||||||| | ||| || |||| |
|
|
| T |
5509637 |
atttatctaaggaagatgcgtctttattttgttgtgtgttgtgaagtatctgaaaacaaagaaaca--agagtgtggaatgaggtaatagattctcaagt |
5509734 |
T |
|
| Q |
138 |
atctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaattta |
237 |
Q |
| |
|
| |||||||||||||| |||| |||||||||| ||||||||||| | ||| ||||||| |||||| || |||| |||||| || |||| | |
|
|
| T |
5509735 |
ttatgttgttgagagagcaaaaactatgtttcagaattggcaagatataggtaggatttgtgatacatattg----caactctgacaagaagaaaatgtg |
5509830 |
T |
|
| Q |
238 |
aaatggatcaaaccagctgaacgaatatttaagtgcaatatt |
279 |
Q |
| |
|
|||||||| |||| ||||||| ||| |||||| ||||||||| |
|
|
| T |
5509831 |
aaatggataaaactagctgaaagaagatttaaatgcaatatt |
5509872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 19051249 - 19051366
Alignment:
| Q |
141 |
tgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaatttaaaa |
240 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||| |||||||| |||| ||||||||||||||| ||| | || || |||||| ||||||| | ||| |
|
|
| T |
19051249 |
tgttgttgagagagcaaaagttatgcttcatgattgacaagatgctcgtaggatttgtaatacatcttgttcgcagtcgtgacaagaaggaaatgtgaaa |
19051348 |
T |
|
| Q |
241 |
tggatcaaaccagctgaa |
258 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19051349 |
tggatcaaaccagctgaa |
19051366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 36098451 - 36098483
Alignment:
| Q |
170 |
atgattggcaagatgcacgtaagatttgtaata |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
36098451 |
atgattggcaagatgcacgtaggatttgtaata |
36098483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 10259916 - 10260245
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||| |||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||||| | || |
|
|
| T |
10259916 |
aagaatcttatcttcaatgcattacatgatttatctaaggacgatgtaactttattttgttctgtgttgtggagtatatggaaacaaagaaacaacaaag |
10260015 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || ||||||||| ||||| || ||| | |||||| ||||||| |||| |||| || ||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
10260016 |
tgtggaatgaggtaattgatcctccagtttatgttgtcgagagagcaaaagttatgctttatgattggcaagatgcacgtaggatttgtaatacatcttg |
10260115 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
||||||||||||||||| ||||||| | |||| |||||||||||||||| ||| |||||||| |||||||||||||||||||| | | |||| || |||| |
|
|
| T |
10260116 |
tgcacaaccgcgacaagaaggaaatgtgaaattgatcaaaccagctgaaggaagatttaagtccaatattgatgcttctttctcctaactttctactaga |
10260215 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10260216 |
gtgggaataggagtttgtataagggatgat |
10260245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 17834793 - 17834555
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||| |||| |||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
17834793 |
aagaatattatcttcaaagcatcacaggatttatctaaggacgatgcagctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaagagag |
17834694 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || ||||||||| |||||||| ||| | |||||| ||||||| |||| |||| ||||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
17834693 |
tgtggaatgaggtaattgatgctccagtgtatgttgtcgagagagtaaaagttatgcttcatgattggcaagatgcacataggatttgtaatacatcttg |
17834594 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaa |
248 |
Q |
| |
|
|||||| |||||||||| ||||||| | |||| |||||| |
|
|
| T |
17834593 |
tgcacatccgcgacaagaaggaaatgtgaaattgatcaa |
17834555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 339
Target Start/End: Complemental strand, 9605408 - 9605209
Alignment:
| Q |
140 |
ctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaatttaaa |
239 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||||||||||| |||| ||||| ||||||||| |||||||||||| |||||| || |||| | || |
|
|
| T |
9605408 |
ctgttgttgagagagcaaaagctatgattcatgattggcaagatgttcgtaggatttataatacatcttgtgcacaaccgggacaagaagaaaatgtgaa |
9605309 |
T |
|
| Q |
240 |
atggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||| || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
9605308 |
attgatcaaaccagctgaaagaatatttaagtgcaatattgatgactctttctcccaactttttattagagtgggaataagagtttgtataagggatgat |
9605209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 8783018 - 8783302
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgt--tgtggagtatttggaaacaaagaaacaatag |
107 |
Q |
| |
|
||||||||||||||| || ||||| | ||||||| ||||||||| | ||||||||| | ||||| |||||||||| | ||||||||||||||| || |
|
|
| T |
8783018 |
aagaatattatcttctaagcattaaaagatttattcaaggaagatgaggctttattttttgctgtgtgctgtggagtatctagaaacaaagaaacaacag |
8783117 |
T |
|
| Q |
108 |
agtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaataca--t |
205 |
Q |
| |
|
||| || || |||||| |||||||| |||| | |||||| |||||||||||| ||||| ||||||| |||||||||||| ||| ||||||||||||| | |
|
|
| T |
8783118 |
agtgtggaaagaggtaattgatgctcaagtttatgttgtggagagagaaaaagctatgcttcatgaatggcaagatgcatgtacgatttgtaatacacat |
8783217 |
T |
|
| Q |
206 |
catgtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttcttt |
290 |
Q |
| |
|
| ||| ||||| || | ||| ||||| | | |||||||||||||||| |||| | |||||||||||||||||||| |||||| |
|
|
| T |
8783218 |
cttgtacacaattgcaagaagaaggaattgtgaaatggatcaaaccagttgaagagagatttaagtgcaatattgatgtttcttt |
8783302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 16912763 - 16912601
Alignment:
| Q |
117 |
tgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaa |
216 |
Q |
| |
|
||||||| |||||||| |||| | |||| | ||||||| |||| ||||| |||||||||| ||| ||||| ||| |||||||||||| | |||||||| |
|
|
| T |
16912763 |
tgaggtaattgatgctcaagtttatgttatggagagagcaaaagctatgcttcatgattgacaaaatgcatgtaggatttgtaatacgttttgtgcacat |
16912664 |
T |
|
| Q |
217 |
ccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatatt |
279 |
Q |
| |
|
|||| ||||| ||||||| | |||||||||||| ||||| || || |||||||||||||||| |
|
|
| T |
16912663 |
ccgcaacaagaaggaaatgtgaaatggatcaaatcagcttaagaaagatttaagtgcaatatt |
16912601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 16912787 - 16912903
Alignment:
| Q |
13 |
aatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtat |
112 |
Q |
| |
|
||||||||||| ||| |||| ||| |||||||| || |||| ||| ||||| |||| | |||||||| |||||| |||||||||| |||||| | ||| | |
|
|
| T |
16912787 |
aatattatcttgaaagcattgcacaatttatctaagaaagacgtggcttta-tttgctgtgtgttgtagagtatctggaaacaaataaacaacatagtgt |
16912885 |
T |
|
| Q |
113 |
gaaatgaggtagttgatg |
130 |
Q |
| |
|
| ||||||||| |||||| |
|
|
| T |
16912886 |
ggaatgaggtaattgatg |
16912903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 48026731 - 48026402
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||| |||| |||||||||||| ||||||||||||||| ||||||||||||||||| || |
|
|
| T |
48026731 |
aagaatattatcttcaaagcattacatgatttatctaaggacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacgaag |
48026632 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || ||||||||| |||||||| | | | |||||| ||||||| | || |||| | |||||||| ||||||||||||| ||||||||||||||| || |
|
|
| T |
48026631 |
tgtggaatgaggtaattgatgctccaatttatgttgtcgagagagcataagttatggtccatgattgacaagatgcacgtaggatttgtaatacatcttg |
48026532 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|| ||| | |||||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
48026531 |
tggacatcggcgacaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaataga |
48026432 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
48026431 |
gtgagaataggagtttgtataagggatgat |
48026402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 20684892 - 20685219
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| ||||||||| | |||||||||| | |||||| |||||||| |||||| |||||||||||| || |
|
|
| T |
20684892 |
aagaatattattttcaaagcattacaagatttatctaaggaagatgcgactttattttgctgtgtgttatggagtatatggaaataaagaaacaataaag |
20684991 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || ||||||||| ||||| | |||| | |||||| ||||||| |||| ||||| |||||||||||||||||||||||| | || ||||||||| || |
|
|
| T |
20684992 |
tgtggaatgaggtaattgatattcaagtttatgttgtggagagagcaaaaactatgcttcatgattggcaagatgcacgtaggtttcgtaatacattttg |
20685091 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||||| ||| ||||| ||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| || |||| ||||||| |
|
|
| T |
20685092 |
tgcacagtcgcaacaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgtttctttcttacaactttctaataga |
20685191 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatg |
337 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
20685192 |
gtgggaatagcagtttgtataagggatg |
20685219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 10 - 330
Target Start/End: Original strand, 53580770 - 53581092
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttat------ctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaaca |
103 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||| || | ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
53580770 |
aagaatattattttcaaagcattacaggatttattattttctaatgaagatgtggctttattttgttgtgtgttgtggagtatatggaaacaaagaaaca |
53580869 |
T |
|
| Q |
104 |
atagagtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatac |
203 |
Q |
| |
|
| | ||| || ||||||||| ||||| || |||| | |||||| ||||||| |||| ||||| |||||||||||||||||||||||| | || | | ||| |
|
|
| T |
53580870 |
acaaagtgtggaatgaggtaattgatactcaagtttatgttgtggagagagcaaaagctatgcttcatgattggcaagatgcacgtaggtttcgcattac |
53580969 |
T |
|
| Q |
204 |
atcatgtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttat |
303 |
Q |
| |
|
||| |||| ||| |||||||||| ||||||| | |||||| ||||||||||| || ||| ||||||||||||||||||||||||||||| || | | |
|
|
| T |
53580970 |
atcttgtgtacagccgcgacaagaaggaaatgtgaaatgggtcaaaccagctcaaggaagatttaagtgcaatattgatgcttctttctcacacc----t |
53581065 |
T |
|
| Q |
304 |
aatagagtgggaataggagtttgtata |
330 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53581066 |
aatagagtgggaataggagtttgtata |
53581092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 143 - 339
Target Start/End: Complemental strand, 52586124 - 52585928
Alignment:
| Q |
143 |
ttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaatttaaaatg |
242 |
Q |
| |
|
|||| ||||||| |||| |||| || |||||||| |||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||| | ||||| |
|
|
| T |
52586124 |
ttgtcgagagagcaaaagttatgattgatgattggtaagatgcacgtaggatttgtaatacatcttgtgcacatccgcgacaagaaggaaatgtgaaatg |
52586025 |
T |
|
| Q |
243 |
gatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
52586024 |
gatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaataagagtttgtataagagatgat |
52585928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 8726378 - 8726703
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| |||| | |||||| | ||||||||| | || ||||||||| ||||||||||| ||| | |||||||| |||||| || | |
|
|
| T |
8726378 |
aagaatattatcttcaaaatattaaatgatttaaataaggaagatgcggctctattttgttgtgtgttgtggattatctagaaacaaataaacaacagtg |
8726477 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatct-atgtttcatgattggcaagatgcacgtaagatttgtaatacatcat |
208 |
Q |
| |
|
| |||| |||||| |||||| | | || | ||||||||||||| ||||| | ||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
8726478 |
t-tgaac-gaggtaattgatgttcatgtttgtgttgttgagagaaaaaaaagttatgcttcatgactggcaagatgcacgtaggatttgtaatacatctc |
8726575 |
T |
|
| Q |
209 |
gtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatag |
308 |
Q |
| |
|
|||||||||| || | ||||||| | |||| |||||||||||||||| ||| |||||||||||| |||||| ||| |||||| || |||| ||||| |
|
|
| T |
8726576 |
gtgcacaaccatgata---aggaaatgtgaaatagatcaaaccagctgaaggaagatttaagtgcaaaattgatacttatttctttcaactttttaataa |
8726672 |
T |
|
| Q |
309 |
agtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |
|
|
| T |
8726673 |
aatgggaatatgagtttgtataagggatgat |
8726703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 9078265 - 9078590
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| |||| | |||||| | ||||||||| | || ||||||||| ||||||||||| ||| | |||||||| |||||| || | |
|
|
| T |
9078265 |
aagaatattatcttcaaaatattaaatgatttaaataaggaagatgcggctctattttgttgtgtgttgtggattatctagaaacaaataaacaacagtg |
9078364 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatct-atgtttcatgattggcaagatgcacgtaagatttgtaatacatcat |
208 |
Q |
| |
|
| |||| |||||| |||||| | | || | ||||||||||||| ||||| | ||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
9078365 |
t-tgaac-gaggtaattgatgttcatgtttgtgttgttgagagaaaaaaaagttatgcttcatgactggcaagatgcacgtaggatttgtaatacatctc |
9078462 |
T |
|
| Q |
209 |
gtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatag |
308 |
Q |
| |
|
|||||||||| || | ||||||| | |||| |||||||||||||||| ||| |||||||||||| |||||| ||| |||||| || |||| ||||| |
|
|
| T |
9078463 |
gtgcacaaccatgata---aggaaatgtgaaatagatcaaaccagctgaaggaagatttaagtgcaaaattgatacttatttctttcaactttttaataa |
9078559 |
T |
|
| Q |
309 |
agtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |
|
|
| T |
9078560 |
aatgggaatatgagtttgtataagggatgat |
9078590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 162 - 339
Target Start/End: Original strand, 4136023 - 4136200
Alignment:
| Q |
162 |
tatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacga |
261 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| ||| |||| ||| |||||| ||||||| | ||||||| ||||| ||||||| || |
|
|
| T |
4136023 |
tatgtttcatgattggcaagatgctcgtaagatttgtaatatatcttgtccacagccgtgacaagaaggaaatgtgaaatggaccaaacaagctgaagga |
4136122 |
T |
|
| Q |
262 |
atatttaagtgcaatattgatgcttctttcttccatctttataatagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
| ||||||||| ||||||||| |||||||| | | |||| |||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
4136123 |
agatttaagtgtaatattgatatttctttctcctagctttctaatagagtgggtataagagtttgtataagggatgat |
4136200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 4135902 - 4135984
Alignment:
| Q |
18 |
tatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaa |
100 |
Q |
| |
|
|||||||||| | ||||| | ||||||| ||||||||| ||||||| ||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
4135902 |
tatcttcaaagccttacatggtttatctaaggaagatgccattttatttggttgtgtgttgtgtagtatctggaaacaaagaa |
4135984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 48858930 - 48859259
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||| ||||||||| |||||||| | |||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
48858930 |
aagagtattatcttcaaagcattacatgatttatctaaggaagatgcaactttatttgactgtgtgttgtggagtatttgaaaacaaagaaaaaacagat |
48859029 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
|| ||||||||| |||||||| |||| | |||||||||||||| |||| |||| ||||||||||||| |||||| ||| ||||||||||||||| || |
|
|
| T |
48859030 |
cgtggaatgaggtaattgatgctcaagtttatgttgttgagagaggaaaaattatgcttcatgattggcatgatgcaagtaggatttgtaatacatcttg |
48859129 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||| |||| ||||||| ||||||| | ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
48859130 |
tgcataaccacgacaagaaggaaatgtgaaatggatcaaaccaactgaaggaagatttaagtgcaatattgatgcttctttctcccaactttctaataga |
48859229 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
||| ||||| |||||||||||||||||||| |
|
|
| T |
48859230 |
gtgagaataagagtttgtataagggatgat |
48859259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 13596408 - 13596736
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||| |||| |||||||||||| ||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
13596408 |
aagaatattatcttcaaagtattacatgatttatctaaggatgatgcaactttattttgttgtgtgttgtggactatgtggaaacaaagaaacaacagag |
13596507 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || |||||||| |||||||| ||| | |||||||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||| || |
|
|
| T |
13596508 |
tgtgggatgaggtaattgatgctccagtttatgttgttgagagagaaaatgttatgcttcatgattggcaagatgcatgtaggatttgtaatacatcttg |
13596607 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||||||||| |||| | || ||| ||||||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
13596608 |
tgcacagttgcgacaagaaggaaatgtgaaatggatcaagccagttaaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaataga |
13596707 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatga |
338 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |
|
|
| T |
13596708 |
gtgggaatagaagtttgtataagagatga |
13596736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 22910661 - 22910989
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| | ||||||| |||||||||||| ||||||||||||||| | ||||||||||||||| | || |
|
|
| T |
22910661 |
aagaatattattttcaaagcattacatgatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatagaaacaaagaaacaacaaag |
22910760 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || ||||||||| ||||| || ||| | ||| || ||||||| |||| ||||| |||||||||||||||||||||||| | || ||||||| || || |
|
|
| T |
22910761 |
tgtggaatgaggtaattgatactcaagcctatgtagtggagagagcaaaaactatgcttcatgattggcaagatgcacgtaggtttcgtaatacttcttg |
22910860 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||||| ||| |||||| ||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| || |||| ||||| | |
|
|
| T |
22910861 |
tgcacatccg-gacaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttcattctcacaactttctaatata |
22910959 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
22910960 |
gtgggaataggagtctgtataagggatgat |
22910989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 23040687 - 23040358
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| | ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| | || |
|
|
| T |
23040687 |
aagaatattattttcaaagcattacaggatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacaaag |
23040588 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || ||||||||| ||||| || |||| | |||| | ||||||| |||| ||| |||||||||||||||||||||||| | || |||||||||| || |
|
|
| T |
23040587 |
tgtggaatgaggtaattgatactcaagtctatgttatggagagagcaaaagttatccttcatgattggcaagatgcacgtaggtttcgtaatacatcttg |
23040488 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||||| |||||||||| ||||||| | ||||| |||||||||||| || ||| |||| |||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
23040487 |
tgcacatccgcgacaagaaggaaatgtgaaatgaatcaaaccagctcaaggaagattttagtgcaatattgatgcttctttctcatagctttctaataga |
23040388 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |
|
|
| T |
23040387 |
gtgggaataggagtctgtataaaggatgat |
23040358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 26754380 - 26754687
Alignment:
| Q |
19 |
atcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtatgaaatg |
118 |
Q |
| |
|
||||||||| ||||||| ||||||||| | ||||||| |||||||||||| ||| |||||| |||| | |||||||||||| || ||||| || |||| |
|
|
| T |
26754380 |
atcttcaaagcattacaagatttatctaaagaagatgcagctttattttgttgtgtattgtggcgtatctagaaacaaagaaataacagagtgtggaatg |
26754479 |
T |
|
| Q |
119 |
aggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaacc |
218 |
Q |
| |
|
||||| |||||| | |||| | |||||| ||||||| |||| || | |||||||||| ||||||||||||| ||||||||| || || |||||||| | |
|
|
| T |
26754480 |
aggtaattgatgatcaagtttatgttgtggagagagcaaaagttacgcttcatgattgacaagatgcacgtaggatttgtaacacgtctcgtgcacaatc |
26754579 |
T |
|
| Q |
219 |
gcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataatagagtgggaata |
318 |
Q |
| |
|
|||||||| | |||| | ||||| ||||||||| |||| ||| |||||||| |||||||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
26754580 |
gcgacaagaaagaaacgtgaaatgaatcaaaccatgtgaaggaagatttaagtacaatattgatgcttctttctcataactttataatagagtgagaata |
26754679 |
T |
|
| Q |
319 |
ggagtttg |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
26754680 |
ggagtttg |
26754687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 17238075 - 17237744
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| || | |||| |||||||||||| | ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
17238075 |
aagaatattatcttcaaaacattacaagatttatctaagaaggatgcaactttattttgttgtatgttgtggagtatatggaaacaaagaaacaacagag |
17237976 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgc--ttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatca |
207 |
Q |
| |
|
| || ||||||||| ||||||| | | | | |||||||||||||| |||| |||| |||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
17237975 |
tgtggaatgaggtaattgatgcgatccattttatgttgttgagagagcaaaagttatgcttcatgattgacaagatgcacgtaggatttgtaatacatct |
17237876 |
T |
|
| Q |
208 |
tgtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataata |
307 |
Q |
| |
|
|||||||| || ||||||| ||||||| | ||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||| | | |||| ||||| |
|
|
| T |
17237875 |
tgtgcacatccacgacaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaaatgcaatattgttgcttctttctcctagctttctaata |
17237776 |
T |
|
| Q |
308 |
gagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
17237775 |
gagtgggaatatgagtttgtataagggatgat |
17237744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 32296477 - 32296157
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| ||||||||| | |||||||||| | ||||||||||||||| ||||||||| |||| || | || |
|
|
| T |
32296477 |
aagaatattattttcaaagcattacaggatttatctaaggaagatgcggctttattttgctgtgtgttgtggagtatatggaaacaa-gaaataacaaag |
32296379 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| | ||||||||| |||| || |||| | | |||| |||||| ||||| ||||||||||||||||||||| || | || |||||||||| || |
|
|
| T |
32296378 |
tctagaatgaggtaattgagactcaagtttatattgt-------gaaaaaactatgcttcatgattggcaagatgcacataggtttcgtaatacatcttg |
32296286 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattgatgcttctttcttccatctttataataga |
309 |
Q |
| |
|
|||| | |||||||||| | |||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||| ||||||| |
|
|
| T |
32296285 |
tgcatagccgcgacaagatgaaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctaacaattttctaataga |
32296186 |
T |
|
| Q |
310 |
gtgggaataggagtttgtataagggatga |
338 |
Q |
| |
|
| |||||||||||||||||||| |||||| |
|
|
| T |
32296185 |
gggggaataggagtttgtataatggatga |
32296157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 15609642 - 15609890
Alignment:
| Q |
9 |
gaagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaataga |
108 |
Q |
| |
|
|||||||| ||| |||||| ||||||| ||||||||| |||| ||| | |||||||||||| |||||||| |||||| |||||| | |||||||| | | |
|
|
| T |
15609642 |
gaagaatactatgttcaaagcattacaagatttatctaaggacgatacgactttattttgttgtgtgttgtagagtatctggaaatagagaaacaacaaa |
15609741 |
T |
|
| Q |
109 |
gtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcat |
208 |
Q |
| |
|
|| || |||||||||||||||||| |||| | |||||| ||||||| |||| |||| ||||||||||||||||||||||| ||||| ||||||||| | |
|
|
| T |
15609742 |
gtgtggaatgaggtagttgatgctcaagtttatgttgtcgagagagtaaaagttatgcttcatgattggcaagatgcacgttggatttttaatacatctt |
15609841 |
T |
|
| Q |
209 |
gtgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctga |
257 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
15609842 |
gtgcacaaccgcgacaagaaggaaatgtgaaatggatcaaaccagctga |
15609890 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 15609892 - 15609925
Alignment:
| Q |
306 |
tagagtgggaataggagtttgtataagggatgat |
339 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
15609892 |
tagagtgggaatatgagtttgtataagggatgat |
15609925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0913
Description:
Target: scaffold0913; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 3061 - 3329
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| |||| | ||||||| | ||||| || |||||||||||||| |||| |
|
|
| T |
3061 |
aagaatattatcttcaaaacattacaagatttatctaaggaagatgtggcttta-tttgatttgtgttgcgcagtatctgaaaacaaagaaacaacagag |
3159 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || || || ||| ||||| | |||| | |||| | |||||| |||| |||| |||||||||| ||| || ||||||||||||||| || |
|
|
| T |
3160 |
tgtggaa-gaagtaattgattgtcaagtttatgttttggagagatcaaaagttatgcttcatgattgacaaaccatttataggatttgtaatacatcttg |
3258 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattg |
280 |
Q |
| |
|
| | || |||||||||| ||||||| | ||||||||||||||| || |||||| ||||| |||||| |||| |
|
|
| T |
3259 |
tacgcagccgcgacaagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg |
3329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0898
Description:
Target: scaffold0898; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 2540 - 2272
Alignment:
| Q |
10 |
aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| |||| | ||||||| | ||||| || |||||||||||||| |||| |
|
|
| T |
2540 |
aagaatattatcttcaaaacattacaagatttatctaaggaagatgtggcttta-tttgatttgtgttgcgcagtatctgaaaacaaagaaacaacagag |
2442 |
T |
|
| Q |
110 |
tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg |
209 |
Q |
| |
|
| || || || ||| ||||| | |||| | |||| | |||||| |||| |||| |||||||||| ||| || ||||||||||||||| || |
|
|
| T |
2441 |
tgtggaa-gaagtaattgattgtcaagtttatgttttggagagatcaaaagttatgcttcatgattgacaaaccatttataggatttgtaatacatcttg |
2343 |
T |
|
| Q |
210 |
tgcacaaccgcgacaagtaggaaatttaaaatggatcaaaccagctgaacgaatatttaagtgcaatattg |
280 |
Q |
| |
|
| | || |||||||||| ||||||| | ||||||||||||||| || |||||| ||||| |||||| |||| |
|
|
| T |
2342 |
tacgcagccgcgacaagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg |
2272 |
T |
|
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