View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_high_15 (Length: 361)
Name: NF12978_high_15
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 56240128 - 56239951
Alignment:
| Q |
10 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
109 |
Q |
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| T |
56240128 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
56240029 |
T |
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| Q |
110 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtac |
187 |
Q |
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| T |
56240028 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtac |
56239951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 23946529 - 23946352
Alignment:
| Q |
10 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
109 |
Q |
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| T |
23946529 |
gcacagaagaaatgggaatatactataaatggggaactacagcagaaacaaaaggcaattgtaggggaagcatctgtatcacacttgcctcgctttgcat |
23946430 |
T |
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| Q |
110 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtac |
187 |
Q |
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| T |
23946429 |
cttttgagatgcacaagatacatttttgtgacttaggctttcggcttggtgctggatacctttattgtcatcaggtac |
23946352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 56239870 - 56239790
Alignment:
| Q |
263 |
gcactgcttatgaaatttgtctcatggtaattttgaaagggaagtttggtgaggttctcctattttacaatagtacaatgc |
343 |
Q |
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| T |
56239870 |
gcactgcttatgaaatttgtctcatggtaattttgaaagggaagtttggtgaggttctcctattttacaatagtacaatgc |
56239790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 23946276 - 23946197
Alignment:
| Q |
263 |
gcactgcttatgaaatttgtctcatggtaattttgaaagggaagtttgg-tgaggttctcctattttacaatagtacaatgc |
343 |
Q |
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| T |
23946276 |
gcactgcttatgaaatttgtctcatggtaa--ttgaaagagaagtttggctgaggttctcctatttttcaatagtacaatgc |
23946197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 16106412 - 16106589
Alignment:
| Q |
10 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
109 |
Q |
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| T |
16106412 |
gcacagaagaaatgggaatatattataaatggggaactacagcagaaacaaaaggcaattgtaggggaagcatctgtatcacacttgcctcgctttgcat |
16106511 |
T |
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| Q |
110 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtac |
187 |
Q |
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| T |
16106512 |
cttttgagatgcacaagatacatttttgtgatttaggctttcggcttggtgctggatacctttattgtcatcaggtac |
16106589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 16106665 - 16106744
Alignment:
| Q |
263 |
gcactgcttatgaaatttgtctcatggtaattttgaaagggaagtttgg-tgaggttctcctattttacaatagtacaatgc |
343 |
Q |
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| T |
16106665 |
gcactgcttatgaagtttgtctcatggtaa--ttgaaagagaagtttggctgaggttctcctatttttcaatagtacaatgc |
16106744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 16624816 - 16624993
Alignment:
| Q |
10 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
109 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| | | ||||||||||| || ||||||||||| ||||| ||| |
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| T |
16624816 |
gcacagaagaaatgggaatatattataaatggagaactacagaagaaacaaaaggcagtccttggggaagcatctgtgtcacacttgccccgtttcacat |
16624915 |
T |
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| Q |
110 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtac |
187 |
Q |
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| T |
16624916 |
ctgttgagatgcacaagatacgtttttgtgatataagctttcaactaggtgctgcatacctttattgtcatcaggtac |
16624993 |
T |
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