View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_high_21 (Length: 268)
Name: NF12978_high_21
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 2309757 - 2309998
Alignment:
| Q |
11 |
caaaggaacattatgttaaatttcggcagattcaataaactgaatttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttga |
110 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2309757 |
caaaggaagattatgttaaattttggcagattcaataaactgaatttctggccgaaagttacaaggattttgtcgcgtaaccaatgggaggagtttttga |
2309856 |
T |
|
| Q |
111 |
agttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcata |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309857 |
agttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcata |
2309956 |
T |
|
| Q |
211 |
tgcagatactcttttagagttagagtggcctgaggagaaacg |
252 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2309957 |
tgcagatactcttttagagttagagtagcctgaggagaaacg |
2309998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 2293426 - 2293667
Alignment:
| Q |
11 |
caaaggaacattatgttaaatttcggcagattcaataaactgaatttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttga |
110 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293426 |
caaaggaagattatgttaaattttggcagattcaataaactgaacttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttga |
2293525 |
T |
|
| Q |
111 |
agttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2293526 |
agttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatattaatactgttgtttcata |
2293625 |
T |
|
| Q |
211 |
tgcagatactcttttagagttagagtggcctgaggagaaacg |
252 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2293626 |
tgcagatactctcttagagttagagtggcctgaggagaaacg |
2293667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 2303048 - 2303280
Alignment:
| Q |
20 |
attatgttaaatttcggcagattcaataaactgaatttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttgaagttactta |
119 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
2303048 |
attatgttaaatatcggcagattcaatatactgaatttctggccgaaagttacaaggattttgttgcgtaaccgatggaaggagtttttgaagttactta |
2303147 |
T |
|
| Q |
120 |
aggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcatatgcagatac |
219 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2303148 |
aggatcaagaggatgttctacttccgctgataagagcgaggaaacaagttaaggagagtaaattgaacaatgttaatactgttgtttcgtatgcagatac |
2303247 |
T |
|
| Q |
220 |
tcttttagagttagagtggcctgaggagaaacg |
252 |
Q |
| |
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|||| ||||||| |||| ||| ||||||||||| |
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| T |
2303248 |
tcttctagagttggagttgcccgaggagaaacg |
2303280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 2320765 - 2320981
Alignment:
| Q |
36 |
gcagattcaataaactgaatttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320765 |
gcagattcaatatactgaatttttggccgaaaggtacaaggattttgttgcgtaaccgatgggaggagtttttgaagttacttaaggatcaagaggatgt |
2320864 |
T |
|
| Q |
136 |
tctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcatatgcagatactcttttagagttagag |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||| |
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| T |
2320865 |
tctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgataatacagttgtttcgtatgcagatactcttttagagttggag |
2320964 |
T |
|
| Q |
236 |
tggcctgaggagaaacg |
252 |
Q |
| |
|
| ||| ||||||||||| |
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| T |
2320965 |
ttgcccgaggagaaacg |
2320981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 2330309 - 2330550
Alignment:
| Q |
11 |
caaaggaacattatgttaaatttcggcagattcaataaactgaatttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttga |
110 |
Q |
| |
|
||||||| ||| |||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| || |
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| T |
2330309 |
caaaggacgattctgttgaattttagcagatttaatatactgaatttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcga |
2330408 |
T |
|
| Q |
111 |
agttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcata |
210 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||||| || |
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| T |
2330409 |
agttgcttaaagatcaagaagatgttctgcttccgctgataagagcgaggaagcatgttaaggagagtagattgaacaatattaatactgttgtttcgta |
2330508 |
T |
|
| Q |
211 |
tgcagatactcttttagagttagagtggcctgaggagaaacg |
252 |
Q |
| |
|
|| |||||||||| | ||||| |||| |||| |||||||||| |
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| T |
2330509 |
tgtagatactcttatggagttggagttgcctcaggagaaacg |
2330550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 2326619 - 2326819
Alignment:
| Q |
36 |
gcagattcaataaactgaatttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgt |
135 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||| || |||||||||||||||| ||||||||||| || |||| ||| | || |||||||| ||||| |
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| T |
2326619 |
gcagattcaatatactgcatttctggccaaaagttgcatggattttgttgcgtaaacaatgggaggaattgttgatgttgcgtagagatcaagaagatgt |
2326718 |
T |
|
| Q |
136 |
tctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcatatgcagatactcttttagagttagag |
235 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| || | ||||| ||||| ||||| ||| |
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|
| T |
2326719 |
tttgcttccgctgataagagggaggaagcaagttaaggagactaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggag |
2326818 |
T |
|
| Q |
236 |
t |
236 |
Q |
| |
|
| |
|
|
| T |
2326819 |
t |
2326819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 252
Target Start/End: Original strand, 2350644 - 2350856
Alignment:
| Q |
40 |
attcaataaactgaatttctggccgaaagttacaaggattttgttgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgttctg |
139 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||| |||||||||| | || | |||||| ||||| |||||||||| ||||||||||| |||||| || |
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| T |
2350644 |
attcaatataataaatttctggccaaaagttactcggattttgttttgcaaacgatgggaagagttgttgaagttacgaaaggatcaagaagatgttttg |
2350743 |
T |
|
| Q |
140 |
cttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcatatgcagatactcttttagagttagagtggc |
239 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |||| ||||| |||| ||||||||||| ||||| |||| || |
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| T |
2350744 |
cttccgctgattagagcgaggaagcaagttaaagagagtagattgaacaatgttaaccctgtagtttcgtatgtggatactcttttggagttggagttgc |
2350843 |
T |
|
| Q |
240 |
ctgaggagaaacg |
252 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
2350844 |
ctgatgagaaacg |
2350856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 252
Target Start/End: Original strand, 41126685 - 41126859
Alignment:
| Q |
75 |
ggattttgttgcgtaaccaatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaagga |
174 |
Q |
| |
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||||||| || ||||| | ||||||||| || |||||||| | || |||||||| |||||||| |||||||| |||||||| |||||| ||| ||||| |
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| T |
41126685 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagccaagga |
41126784 |
T |
|
| Q |
175 |
gagtaaattgaacaatgttaatactgttgtttcatatgcagatactcttttagagttagagtggcctgaggagaaacg |
252 |
Q |
| |
|
|| | ||||| ||| || | ||||||||| ||||||||||||||||| || || |||| ||| ||||||||||| |
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| T |
41126785 |
aaggagattgagcaaa---aacaatgttgtttcctatgcagatactcttttggaattggagttgcccgaggagaaacg |
41126859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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