View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12978_high_3 (Length: 803)
Name: NF12978_high_3
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 6e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 15 - 451
Target Start/End: Original strand, 13281450 - 13281889
Alignment:
| Q |
15 |
atgaatatccgattattgagtatgagtaaaatttggttgggatgaaaagactcgtcctat-----gaattcccatattcatcaataatagttagtctatg |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||| | |||||||||||| ||||||||||| |
|
|
| T |
13281450 |
atgaatatccgattattgagtatgaataaaatttggttgagatgaaaagactcatcctatcctatgaattcctagattcatcaataaaagttagtctatt |
13281549 |
T |
|
| Q |
110 |
tttgatatcatgataagtgtgtcataatcgtggctacacatcatgatttttctaaagtt-acactttttagtttatgtaaaattacaaaaattctggcat |
208 |
Q |
| |
|
||| ||||||| | | |||||||||||| | ||| |||| | ||||||| |||||| | | ||| ||||| ||||| ||||||| ||||| | | |
|
|
| T |
13281550 |
tttattatcatggtgattgtgtcataatcacgactaaacattgtaatttttcaaaagtttatattttatagttgatgtagaattacattgattctagtac |
13281649 |
T |
|
| Q |
209 |
atacacggtgataccaacca---acggttgatattgattatcaaaaatacattgtaaggaaatatagaatctgggaacatgagagccccgcaattttagc |
305 |
Q |
| |
|
||| || ||||||||||| | || ||||||||||||||| ||||| | || |||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
13281650 |
atataccgtgataccaactatacactgttgatattgattataaaaaaaa-atac--aggaaacatagaatctgtgaacatgagagccccgcgattttagc |
13281746 |
T |
|
| Q |
306 |
tgccagtttgcttgaatgttttgtcctttttgttggaagcatttgtgtaaatttgattgtgtacacctttgttgtactctctctttagccgttagtttct |
405 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| | ||||||||| ||||| || ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
13281747 |
tgccactttgcttgaatgttttgtcctttttgttgtaagca-gtatgtaaatttaattgtatatccctttcttgta--ctctctttagccgttagtttct |
13281843 |
T |
|
| Q |
406 |
gtaaaaaataaagtaaattatctatctatttcttacccctaaaaac |
451 |
Q |
| |
|
|||||||| | | | ||||||||||| |||||||||||||||| |
|
|
| T |
13281844 |
gtaaaaaagtgaattacctatctatctatctcttacccctaaaaac |
13281889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 510 - 596
Target Start/End: Original strand, 13281898 - 13281985
Alignment:
| Q |
510 |
gtttgttttgttagaaataatgagacatttttagtcaaaacaat-aataattaatgagacatttagttatggaatatctcactcattt |
596 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13281898 |
gtttgttttgttagaaataatgaaacatttttagtcaaaaaaattaataattaatgagacatttagttatgggatatctcactcattt |
13281985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University