View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12978_high_5 (Length: 673)

Name: NF12978_high_5
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12978_high_5
NF12978_high_5
[»] chr1 (3 HSPs)
chr1 (1-665)||(44553969-44554633)
chr1 (519-649)||(44532706-44532836)
chr1 (592-653)||(41605334-41605395)
[»] chr6 (2 HSPs)
chr6 (519-634)||(12682075-12682190)
chr6 (23-124)||(12682531-12682632)


Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Original strand, 44553969 - 44554633
Alignment:
Q  1 taacaactcgttcttgctcacgtttctcaataacctccaagaatctcttctgcaaatcctcttgcttctcggtcactttcttcattattctctcaaaaaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44553969 taacaactcgttcttgctcgcgtttctcaataacctccaagaatctcttctgcaaatcctcttgcttctcggtcactttcttcattattctctcaaaaaa 44554068  T
Q  101 gtccttccattttcgcttcctctttcgagatccttcttcggttgtgtcttcggaagaagttgagtaggagctagccatggaattggataatagatctgta 200  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  44554069 gttcttccattttcgcttcctctttcgagatccttcttccgttgtgtcttcggaagatgtcgagtaggagctagccatggaattggataatagatctgta 44554168  T
Q  201 gaaatgttaggaaaagatggaagagggttggtggaagtagggtttgttgttgatggttggaaaatagttgaaggattggatgggattgtaggattcatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44554169 gaaatgttaggaaaagatggaagagggttggtggaagtagggtttgttgttgatggttggaaaatagttgaaggattggatgggattgtaggattcatat 44554268  T
Q  301 tcataattggttgggtagttgcaatattgttttgaggcatggaaattgatggaacagttgcatgagggatacttagagtggtgttaaccacttgtgacat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44554269 tcataattggttgggtagttgcaatattgttttgaggcatggaaattgatggaacagttgcatgagggatacttagagtggtgttaaccacttgtgacat 44554368  T
Q  401 tgttgcttctgttattggtagtgaaactgttgcagttgtaacaacttgtgaaggtgttggtgccgaaatttgtggtggttttgatatgttttgaggtgaa 500  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44554369 tgttgattctgttattggtagtgaaactgttgcagttgtaacaacttgtgacggtgttggtgccgaaatttgtggtggttttgatatgttttgaggtgaa 44554468  T
Q  501 gggttggtatgaaaatgatcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44554469 gggttggtatgaaaatgatcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgat 44554568  T
Q  601 acttataaacattctcaaacttctctttgcatttctttgaacttctgtggtacacaggttctgct 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  44554569 acttataaacattctcaaacttctctttgcatttctttgaacttctgtggtacccaagttctgct 44554633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 519 - 649
Target Start/End: Complemental strand, 44532836 - 44532706
Alignment:
Q  519 tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaa 618  Q
    ||||| |||| ||||||||||||||||| ||| || || || |||||||| |||| || ||| ||||||||||| ||||||||||| || ||||| ||||    
T  44532836 tcaagtgcttgtaattgatcaaaaaatctataggtttttccttctgatttcccacttctaccttctttggttcttttgtgatacttgtatacattttcaa 44532737  T
Q  619 acttctctttgcatttctttgaacttctgtg 649  Q
    | ||||| ||||| |||||||| ||||||||    
T  44532736 atttctccttgcacttctttgagcttctgtg 44532706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 653
Target Start/End: Original strand, 41605334 - 41605395
Alignment:
Q  592 tcttgtgatacttataaacattctcaaacttctctttgcatttctttgaacttctgtggtac 653  Q
    |||||| |||||| || | |||||||||||| |||||||||||||||  |||||| ||||||    
T  41605334 tcttgtaatacttgtacaaattctcaaacttttctttgcatttctttccacttctttggtac 41605395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 519 - 634
Target Start/End: Complemental strand, 12682190 - 12682075
Alignment:
Q  519 tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaa 618  Q
    |||||||||| |||||||||||| |||| |||||| |||||||||||||| |||||||  || |||||||||||||||||||| || |||||||||||||    
T  12682190 tcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttctttggttctcttgtgatatttgtaaacattctcaa 12682091  T
Q  619 acttctctttgcattt 634  Q
    |||| |||||||||||    
T  12682090 acttttctttgcattt 12682075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 12682632 - 12682531
Alignment:
Q  23 tttctcaataacctccaagaatctcttctgcaaatcctcttgcttctcggtcactttcttcattattctctcaaaaaagtccttccattttcgcttcctc 122  Q
    |||||| ||| | |||||||||||||| || || |||||||| |||||    || | |||||||| ||||||||| || ||||||||||| | |||||||    
T  12682632 tttctctatagcttccaagaatctcttatgtaactcctcttgtttctcaacaacctccttcattagtctctcaaagaaatccttccatttcctcttcctc 12682533  T
Q  123 tt 124  Q
    ||    
T  12682532 tt 12682531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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