View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_high_9 (Length: 572)
Name: NF12978_high_9
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 515
Target Start/End: Complemental strand, 1321147 - 1321082
Alignment:
| Q |
450 |
cttctcgctatttacatttccgggtatattccccacattttagcatgaactgtattacaggctcca |
515 |
Q |
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| T |
1321147 |
cttctcgctatttacatttccgtgtatattccccacattttagcatgaactgtattacaggctcca |
1321082 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 1321293 - 1321261
Alignment:
| Q |
15 |
aattaataaaaattaaaaagaacatgaattgac |
47 |
Q |
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| T |
1321293 |
aattaataaaaattaaaaaggacatgaattgac |
1321261 |
T |
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