View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12978_low_10 (Length: 467)

Name: NF12978_low_10
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12978_low_10
NF12978_low_10
[»] chr1 (1 HSPs)
chr1 (82-451)||(48311402-48311754)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 82 - 451
Target Start/End: Complemental strand, 48311754 - 48311402
Alignment:
Q  82 aacattcatt-aattaagttagttgaatgaaaaaattacgaacataagtannnnnnngtttgaatttgtgggacacaattactaccaatttgtgaaatta 180  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||    
T  48311754 aacattcattcaattgagttagttgaatgaaaaaattacgaacataagtatttttatgtttgaatttgtgggacacaattactaccaacttgtgaaatta 48311655  T
Q  181 atagacttaaatgttggacattcactacatgaatttacaaggtaatttcactnnnnnnnnttagcaggtgactcactaatgacgtggcagaaaaagaaaa 280  Q
    |||||| |||||||||||||||||||||||||||||| ||   ||||               ||||||||||||||||||||||||||||||||||||||    
T  48311654 atagacctaaatgttggacattcactacatgaatttaaaa---aatt---------------agcaggtgactcactaatgacgtggcagaaaaagaaaa 48311573  T
Q  281 gcgtgagtgaggttgaagaagcgagtgggagtttaaagccgcaatcacaaactaaccctttctgttctgttccacatgaataaatgaacttttgctattt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48311572 gcgtgagtgaggttgaagaagcgagtgggagtttaaagccgcaatcacaaactaaccctttctgttctgttccacatgaataaatgaacttttgctattt 48311473  T
Q  381 gcaccaccaccatttcccacgaattcggaactgacacatttcatatttattctgtctctggatgcaaaaac 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48311472 gcaccaccaccatttcccacgaattcggaactgacacatttcatatttattctgtctctggatgcaaaaac 48311402  T

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