View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12978_low_11 (Length: 427)
Name: NF12978_low_11
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_11 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 14466022 - 14465608
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||| |||| |||||||| |||||| |||||||||||||||| |
|
|
| T |
14466022 |
tgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttcc |
14465923 |
T |
|
| Q |
101 |
caactac---aaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgc |
197 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| | || |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14465922 |
caactactacaaggattattaccaatccatgaagagagtagtgtcttgctttggttgtcaaagcttgctttccacttcaacagagcatctgtctcactgc |
14465823 |
T |
|
| Q |
198 |
ttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacactgctttggttgtaactgcttcattctatgaag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14465822 |
ttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacactgctttggttgtaactgcttcattctatgaag |
14465723 |
T |
|
| Q |
298 |
cattttggaaatttgaaaacaatgagattatagttaatcactcaaagtataatagaacaagagacttatttggtaggatttgtgaattttaatctaagaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14465722 |
cattttggaaatttgaaaacaatgagagtatagttaatcactcaaagtataatagaacaagagacttatttggtaggatttgtgaattttaatctaagaa |
14465623 |
T |
|
| Q |
398 |
gtggatgatatttat |
412 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14465622 |
gtggatgatatttat |
14465608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 15035452 - 15035185
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
15035452 |
tgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcc |
15035353 |
T |
|
| Q |
101 |
caactac---aaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgc |
197 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15035352 |
caactactacaaggattattaccaatccatgaagagagcaatgccctgttgtggttgtcaaggcttgctttccacttcaacagagcatctgcctcactgc |
15035253 |
T |
|
| Q |
198 |
ttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacac |
265 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| || ||| ||||||||||||||| |||||||||| |
|
|
| T |
15035252 |
ctttgatttttgttgcagcatgaggtgatgtggcaattacatacacatagaagaacaaaagaagacac |
15035185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 15015979 - 15015712
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
15015979 |
tgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttcc |
15015880 |
T |
|
| Q |
101 |
ca---actacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgc |
197 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||||||| |||| ||||| || |
|
|
| T |
15015879 |
cagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggc |
15015780 |
T |
|
| Q |
198 |
ttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacac |
265 |
Q |
| |
|
||||||||||||||||| ||||| |||| || ||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
15015779 |
ctttgatttttgttgcagcatgaggtgatttgatcattacaaacacataaaagaacaaaagaagacac |
15015712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 14502126 - 14501862
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| ||||||| |||||||||| |||| |||||||||||| |||| | |||||||||||||||| |
|
|
| T |
14502126 |
tgatgataaattgagactttgaagcgtaccttttagtccaatatcagtgagatttaccttgttgatggattttgaatcattatcacatgtgattccttcc |
14502027 |
T |
|
| Q |
101 |
caactacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttt |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||| | ||| || | || |
|
|
| T |
14502026 |
caactacaaggattattaccattccatgaagaaagcaatgccctactgttgttgtcaaggcttgctttccacttcaacagagcatcagcctcgctacctt |
14501927 |
T |
|
| Q |
201 |
tgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacac |
265 |
Q |
| |
|
|||| ||||||||| ||||| |||||| || || ||||||||||||||||||| || ||||||| |
|
|
| T |
14501926 |
ggattattgttgcagcatgaggtgatgttgcaattacaaacacatagaagaacaaaataagacac |
14501862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 15009576 - 15009252
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |||| |||||| || || |||| | ||| |||||||||||| |
|
|
| T |
15009576 |
tgatgagaagttgagactctgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttcc |
15009477 |
T |
|
| Q |
101 |
caactacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttt |
200 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||| |||||||| | ||| || | || |
|
|
| T |
15009476 |
caaccacaaggattattaccaatccatgaagagagaaatgccctgctatggttgtcaaggcttgatttccacttcaatagagcatcagcctcgctacctt |
15009377 |
T |
|
| Q |
201 |
tgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacactgctttggttgtaactgcttcattctatgaagcat |
300 |
Q |
| |
|
|||||||||||||| ||||| |||||| || || ||||||||||||||||||| || |||||| || ||| |||| |||||||||| ||||| || |
|
|
| T |
15009376 |
ggatttttgttgcagcatgaggtgatgttgcaattacaaacacatagaagaacaaaataagacatggcattg---gtaagagcttcattctttgaagtat |
15009280 |
T |
|
| Q |
301 |
tttggaaatttgaaaacaatgagattat |
328 |
Q |
| |
|
||||||||||| || ||||||| ||||| |
|
|
| T |
15009279 |
tttggaaatttcaacacaatgaaattat |
15009252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 15023693 - 15023369
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||| |||||| || || |||| | ||| |||||||||||| |
|
|
| T |
15023693 |
tgatgagaaattgagactttgaagagtaccgtttaatccaatattggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttcc |
15023594 |
T |
|
| Q |
101 |
caactacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttt |
200 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||| |||||||| | ||| || | || |
|
|
| T |
15023593 |
caaccacaaggattattaccaatccatgaagagagaaatgccctgctatggttgtcaaggcttgttttccacttcaatagagcatcagcctcgctacctt |
15023494 |
T |
|
| Q |
201 |
tgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacactgctttggttgtaactgcttcattctatgaagcat |
300 |
Q |
| |
|
|||||||||||||| ||||| |||||| || || |||||||| |||||||||| || |||||| | ||| |||| |||||||||| ||||| || |
|
|
| T |
15023493 |
ggatttttgttgcagcatgaggtgatgttgcaattacaaacacttagaagaacaaaataagacatgacattg---gtaagagcttcattctttgaagtat |
15023397 |
T |
|
| Q |
301 |
tttggaaatttgaaaacaatgagattat |
328 |
Q |
| |
|
||||||||||| || ||||||| ||||| |
|
|
| T |
15023396 |
tttggaaatttcaacacaatgaaattat |
15023369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 15030674 - 15030350
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |||| |||||| || || |||| | ||| |||||||||||| |
|
|
| T |
15030674 |
tgatgagaagttgagactctgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttcc |
15030575 |
T |
|
| Q |
101 |
caactacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttt |
200 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||| |||||||| | ||| || | || |
|
|
| T |
15030574 |
caaccacaaggattattaccaatccatgaagagagaaatgccctgctatggttgtcaaggcttgatttccacttcaatagagcatcagcctcgctacctt |
15030475 |
T |
|
| Q |
201 |
tgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagacactgctttggttgtaactgcttcattctatgaagcat |
300 |
Q |
| |
|
|||||||||||||| ||||| |||||| || || ||||||||||||||||||| || |||||| || ||| |||| |||||||||| ||||| || |
|
|
| T |
15030474 |
ggatttttgttgcagcatgaggtgatgttgcaattacaaacacatagaagaacaaaataagacatggcattg---gtaagagcttcattctttgaagtat |
15030378 |
T |
|
| Q |
301 |
tttggaaatttgaaaacaatgagattat |
328 |
Q |
| |
|
||||||||||| || | ||||| ||||| |
|
|
| T |
15030377 |
tttggaaatttcaacagaatgaaattat |
15030350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 15000973 - 15000640
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | || | ||| |||||||||||| |
|
|
| T |
15000973 |
tgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttatcatgttgatggattttgattgataatcacacgtgattccttcc |
15000874 |
T |
|
| Q |
101 |
caactac---aaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgc |
197 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||| | |
|
|
| T |
15000873 |
caactactacaaggattattgccaatccatgaagagagcaatgccctgctgtggttgtcaaggcttgccttccatttcaacagagcatcaacctcactac |
15000774 |
T |
|
| Q |
198 |
ttttgatttttgttgcagtatgagat------gatgtggccataacaaacacatagaagaacacaagaagacactgctttggttgtaactgcttcattct |
291 |
Q |
| |
|
|| | ||||| |||||| ||||| | |||||||| || ||||||||||||||||||| || ||||||| | ||| |||| |||| |||| |
|
|
| T |
15000773 |
cttggttttttcttgcagcatgaggtgatgtggatgtggcaattacaaacacatagaagaacaaaataagacacgacattg---gtaatagcttatttct |
15000677 |
T |
|
| Q |
292 |
atgaagcattttggaaatttgaaaacaatgagattat |
328 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
15000676 |
ttgaagcattttggaaatttcaacacaatgaaattat |
15000640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 14534641 - 14534902
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||| |||||| ||||| | || | ||| |||||||||||| |
|
|
| T |
14534641 |
tgatgagaaattgagactttgaagcgtaccttttagtccaatatcagtgagatttaccttgttgatggactttgatttataatcacacgtgattccttcc |
14534740 |
T |
|
| Q |
101 |
caacta---caaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgc |
197 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
14534741 |
caactactacaaggattattgccaatccatgaagagagcaaagcattgctatggttgtcaaggcttgctttccacttcaacagagcatcagcctcgctgc |
14534840 |
T |
|
| Q |
198 |
ttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaaga |
262 |
Q |
| |
|
|| | |||||||||| || | | ||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
14534841 |
cttggtcatttgttgcagcat---aaggtgtggccatgacaaacacaaagaagaacaaaagaaga |
14534902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 14524664 - 14524905
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||| |||||| | | |||| || |||| |||| |||||||| | || |||||||||||| || |
|
|
| T |
14524664 |
tgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatagattttgacttgccatcacatgtgattcccacc |
14524763 |
T |
|
| Q |
101 |
caactacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttt |
200 |
Q |
| |
|
||| | ||||| || |||||||||||||||||||||| | |||||| |||||||||| |||||||||||| ||||| | ||||| || ||| ||||||| |
|
|
| T |
14524764 |
caattgcaaggcttattaccaatccatgaagagagcaaagacttgctttggttgtcaaagcttgctttccatttcaataaagcatttgcctcgctgcttt |
14524863 |
T |
|
| Q |
201 |
tgatttttgttgcagtatgagatgatgtggccataacaaaca |
242 |
Q |
| |
|
|| |||| || || | ||| |||||||||||| ||||||| |
|
|
| T |
14524864 |
gcatatttgctgaagcaagaggtgatgtggccattacaaaca |
14524905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 14480812 - 14480654
Alignment:
| Q |
103 |
actacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttttg |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | | ||||||| || ||||||| ||||||||||||||| || |||||||||| ||| ||| || | |
|
|
| T |
14480812 |
actacaaggattattaccaatccatgaagagagtatttccttgctttgtttgtcaaagcttgctttccactttaaaagagcatctgcctcgttgccttgg |
14480713 |
T |
|
| Q |
203 |
atttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaag |
261 |
Q |
| |
|
|||||| ||| ||||| |||||| |||| ||||||||| | ||||||| |||||| |
|
|
| T |
14480712 |
ttttttgcatcagcatgaggtgatgtaaccattacaaacacacaaaagaacaaaagaag |
14480654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 14480929 - 14480825
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| | ||||||||| || |||| || |||||||||| || | |||| ||||||||||| |
|
|
| T |
14480929 |
tgatgagaaattgagactttgaagtgtaccttttagttcaaaactggtgagatctatcttgttaatagattttgagttattatcacatatgattccttcc |
14480830 |
T |
|
| Q |
101 |
caact |
105 |
Q |
| |
|
||||| |
|
|
| T |
14480829 |
caact |
14480825 |
T |
|
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Target: scaffold0400 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 5427 - 5171
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5427 |
tgatgagaaattgagactttgaagcataccttttaggccaatattggtgagatttaacttgcagatagattttgagtcatcacaacatgtgattccttcc |
5328 |
T |
|
| Q |
101 |
caa---ctacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgc |
197 |
Q |
| |
|
||| |||||||||| | |||| ||||||||||||||||||||| | || |||||||||| |||||||||||||||||| ||| ||||| || |||| |
|
|
| T |
5327 |
caactactacaaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagaacatctacttcgctgc |
5228 |
T |
|
| Q |
198 |
ttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaaca |
254 |
Q |
| |
|
|| ||||||||||| | ||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
5227 |
cttggatttttgttgtggcatgaggtgatgtggctattacaaacacatagaagaaca |
5171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10923 - 10660
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||| |||||| | | |||| || |||| |||| |||||||| | || |||||||||||| || |
|
|
| T |
10923 |
tgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatagattttgacttgccatcacatgtgattcccacc |
10824 |
T |
|
| Q |
101 |
caactacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttt |
200 |
Q |
| |
|
||| | ||||| || |||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| | ||||| || ||| ||||||| |
|
|
| T |
10823 |
caattgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaagcttgctttccatttcaataaagcatttgcctcgctgcttt |
10724 |
T |
|
| Q |
201 |
tgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagaca |
264 |
Q |
| |
|
|||||| | || ||||| |||||| ||||| ||||||| | | |||||| ||||||||| |
|
|
| T |
10723 |
gcgtttttgacgaagcatgaggtgatgttgccattacaaacatacaaaagaaccaaagaagaca |
10660 |
T |
|
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Target: scaffold0365 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 6071 - 5815
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6071 |
tgatgagaaattgagactttgaagcataccttttaggccaatattggtgagatttaacttgcagatagattttgagtcatcacaacatgtgattccttcc |
5972 |
T |
|
| Q |
101 |
caa---ctacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgc |
197 |
Q |
| |
|
||| |||||||||| | |||| ||||||||||||||||||||| | || |||||||||| |||||||||||||||||| ||| ||||| || |||| |
|
|
| T |
5971 |
caactactacaaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagaacatctacttcgctgc |
5872 |
T |
|
| Q |
198 |
ttttgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaaca |
254 |
Q |
| |
|
|| ||||||||||| | ||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
5871 |
cttggatttttgttgtggcatgaggtgatgtggctattacaaacacatagaagaaca |
5815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 11566 - 11303
Alignment:
| Q |
1 |
tgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcc |
100 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||| |||||| | | |||| || |||| |||| |||||||| | || |||||||||||| || |
|
|
| T |
11566 |
tgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatagattttgacttgccatcacatgtgattcccacc |
11467 |
T |
|
| Q |
101 |
caactacaaggattgctaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagcatctgtctcactgcttt |
200 |
Q |
| |
|
||| | ||||| || |||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| | ||||| || ||| ||||||| |
|
|
| T |
11466 |
caattgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaagcttgctttccatttcaataaagcatttgcctcgctgcttt |
11367 |
T |
|
| Q |
201 |
tgatttttgttgcagtatgagatgatgtggccataacaaacacatagaagaacacaagaagaca |
264 |
Q |
| |
|
|||||| | || ||||| |||||| ||||| ||||||| | | |||||| ||||||||| |
|
|
| T |
11366 |
gcgtttttgacgaagcatgaggtgatgttgccattacaaacatacaaaagaaccaaagaagaca |
11303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 16170789 - 16170728
Alignment:
| Q |
123 |
tccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacagagca |
184 |
Q |
| |
|
|||||||||| ||||| | | ||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
16170789 |
tccatgaagatagcaaagtttggctatggttgtcaagacttgctttccacttcaacaaagca |
16170728 |
T |
|
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