View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12978_low_12 (Length: 412)

Name: NF12978_low_12
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12978_low_12
NF12978_low_12
[»] chr4 (9 HSPs)
chr4 (5-289)||(16591993-16592277)
chr4 (39-174)||(16602477-16602612)
chr4 (179-285)||(16602671-16602777)
chr4 (179-269)||(35335020-35335110)
chr4 (32-108)||(16591900-16591976)
chr4 (39-109)||(35335546-35335616)
chr4 (39-108)||(35335415-35335484)
chr4 (40-108)||(35335679-35335747)
chr4 (180-232)||(35326993-35327045)
[»] chr1 (2 HSPs)
chr1 (180-238)||(24540733-24540791)
chr1 (27-89)||(24541083-24541145)
[»] chr3 (2 HSPs)
chr3 (180-236)||(3175390-3175446)
chr3 (29-89)||(3175705-3175765)
[»] chr6 (1 HSPs)
chr6 (180-238)||(14674831-14674889)
[»] chr5 (1 HSPs)
chr5 (180-238)||(20964474-20964532)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 16591993 - 16592277
Alignment:
Q  5 tgcccctattcgtcatcaccaacctcgtcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacc 104  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16591993 tgcccctattcatcatcaccaacctcgtcaccctgttaaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacc 16592092  T
Q  105 catcgtcaccatcaccaccctcctgcccatccccctgttcatcaacaacatcctccgcctcatgcccctgcccaaatagctgttgaaggtgttgtttatg 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16592093 catcgtcatcatcaccaccctcctgcccatccccctgttcatcaacaacatcctccggctcatgcccctgcccaaatagctgttgaaggtgttgtttatg 16592192  T
Q  205 tcaaatcatgcaagcatgctggagttgacaccctttcgaatgctacatctcttaatggtttgtctttcggttttcacatttgtta 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16592193 tcaaatcatgcaagcatgctggagttgacaccctttcgaatgctacatctcttaatggtttgtctttcagttttcacatttgtta 16592277  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 16602477 - 16602612
Alignment:
Q  39 gctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatcgtcaccatcaccaccctcctgcccatcccc 138  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16602477 gctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatcgtcaccatcaccaccctcctgcccatcccc 16602576  T
Q  139 ctgttcatcaacaacatcctccgcctcatgcccctg 174  Q
    || |||||||||||||||||||| ||||||||||||    
T  16602577 ctattcatcaacaacatcctccggctcatgcccctg 16602612  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 16602671 - 16602777
Alignment:
Q  179 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccctttcgaatgctacatctcttaatggtttgtctttcggtttt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||  |||||    
T  16602671 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgaaaccctttcgaatgctacatctctcaatggtctgtcttttagtttt 16602770  T
Q  279 cacattt 285  Q
    | |||||    
T  16602771 cccattt 16602777  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 35335110 - 35335020
Alignment:
Q  179 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccctttcgaatgctacatctcttaatggtttgtct 269  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |  |||||||||| | | ||||||||||    
T  35335110 aatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgctggaggtgacacccttttgggtgctacatctataattggtttgtct 35335020  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 16591900 - 16591976
Alignment:
Q  32 tcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatc 108  Q
    |||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||| || ||||||    
T  16591900 tcaccctgctaaacctccaacccgtcaccaccaccaacaccctcctgctcatgcccctcttcaaccttcatcccatc 16591976  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 35335616 - 35335546
Alignment:
Q  39 gctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatcg 109  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||| ||||| ||||||||||||| |||||    
T  35335616 gctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacacatcg 35335546  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 35335484 - 35335415
Alignment:
Q  39 gctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatc 108  Q
    |||||||||||||||||||| | |||||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  35335484 gctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgcatc 35335415  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 35335747 - 35335679
Alignment:
Q  40 ctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatc 108  Q
    ||||||| |||||||||| ||| ||||||||  |||||||||| |||||||||||||||||||| ||||    
T  35335747 ctaaacccccaacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctccaacacatc 35335679  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 35327045 - 35326993
Alignment:
Q  180 atagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttga 232  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  35327045 atagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgctggtgttga 35326993  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 24540791 - 24540733
Alignment:
Q  180 atagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccct 238  Q
    |||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||    
T  24540791 atagctgttgaaggagttgtttatgtcaaatcatgcaaccatactggtgttgacaccct 24540733  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 24541145 - 24541083
Alignment:
Q  27 cctcgtcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccct 89  Q
    |||||||||||||| ||||| ||||| ||||| || || |||||| ||||||||||| |||||    
T  24541145 cctcgtcacccagcaaaacccccaactcatcatcatcaacaacactctcctgctcattcccct 24541083  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 3175446 - 3175390
Alignment:
Q  180 atagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacacc 236  Q
    |||||||||||||||||||||||||||||||||||||| ||| | || |||||||||    
T  3175446 atagctgttgaaggtgttgtttatgtcaaatcatgcaaccataccggtgttgacacc 3175390  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 3175765 - 3175705
Alignment:
Q  29 tcgtcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccct 89  Q
    ||||||||| || ||||| ||||||||||| || ||||| ||| |||||||||||||||||    
T  3175765 tcgtcaccctgcaaaacccccaacccatcatcatcatcatcactctcctgctcatgcccct 3175705  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 14674889 - 14674831
Alignment:
Q  180 atagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccct 238  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||  ||||||||||    
T  14674889 atagctgttgaaggagttgtttatgtcaaatcatgccaccatgctggttttgacaccct 14674831  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 20964474 - 20964532
Alignment:
Q  180 atagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccct 238  Q
    |||| ||||||||| ||||||||||||||||| ||||| |||  ||| |||||||||||    
T  20964474 atagttgttgaaggagttgtttatgtcaaatcttgcaaccataatggtgttgacaccct 20964532  T

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