View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_low_17 (Length: 315)
Name: NF12978_low_17
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 42330719 - 42330846
Alignment:
| Q |
132 |
tgtcatttcagaataaaactaagattcaaaccaagttccaagattggtaacaaaacaagaaggtggagctctccttttactataaaccattctgctcctc |
231 |
Q |
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| T |
42330719 |
tgtcatttcagaataaaactaagattcaaaccaagttccaagattggtaacaaaacaagaaggtggagctctccttttactataaaccattctgctcctc |
42330818 |
T |
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| Q |
232 |
attcctttgcttaaaataaaatgttact |
259 |
Q |
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| T |
42330819 |
attcctttgcataaaataaaatgttact |
42330846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 42330638 - 42330718
Alignment:
| Q |
9 |
gaagaatatcttgaggaacagggcgcataaattaaaggaattccaccccaccacaaatgttcaagactaaatacaaactta |
89 |
Q |
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| T |
42330638 |
gaagaatatcttgaggaacagggcgcataaattaaaggaattccaccccaccacaaatgttcaagactaaatacatactta |
42330718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 42331596 - 42331636
Alignment:
| Q |
259 |
tactatgagttatggaaggagtatgtttttatgttcctttt |
299 |
Q |
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| T |
42331596 |
tactatgagttatggaaggagtatgcttttatgttcctttt |
42331636 |
T |
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