View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_low_20 (Length: 269)
Name: NF12978_low_20
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 28397465 - 28397713
Alignment:
| Q |
11 |
cacagacttagtcgaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaa---------atgtgaatcatggagatgtgt |
101 |
Q |
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| T |
28397465 |
cacagacttagtcgaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaaatgtggaaaatgtgaatcatggagatgtgt |
28397564 |
T |
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| Q |
102 |
atgaggagactaggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaa |
201 |
Q |
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| T |
28397565 |
atgaggagactaggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatagagggagtttgttttcaagatttggctaa |
28397664 |
T |
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| Q |
202 |
ttatattgatgggagaatgtaatttcaatgtgtaacagactcaacttat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28397665 |
ttatattgatgggagaatgtaatttcaatgtgtaacagagtcaacttat |
28397713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 37667798 - 37667922
Alignment:
| Q |
116 |
aaataataagagaatattgtgatagggg----gatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
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|||||||| ||||| ||||||||| ||| ||| ||||||||| | |||||||| | |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
37667798 |
aaataataggagaacattgtgataagggatatgatggtttgcgtgaggtcatatggata-ggagggagtttgttttcttgatttggataattgtattgat |
37667896 |
T |
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| Q |
212 |
gggagaatgtaatttcaatgtgtaac |
237 |
Q |
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| T |
37667897 |
gtaagagagtgattttaatgtgtaac |
37667922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 337663 - 337522
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
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|||||| ||||||||||||| ||||| |||| ||| ||||||| ||| | | ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
337663 |
taggaagtaataagagaatactgtgagaggga-ataatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt |
337565 |
T |
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| Q |
212 |
gggagaatgtaatttcaatgtgtaacagactcaacttattgat |
254 |
Q |
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| T |
337564 |
ggaagaaactgatttcaatgtgtaactcacccaactaattgat |
337522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 43408466 - 43408531
Alignment:
| Q |
172 |
ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
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|||||||||| ||||||||||||||| ||||| |||||||| ||| || |||| |||||||||| |
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| T |
43408466 |
ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaac |
43408531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 22077258 - 22077134
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
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|||||| ||||||||||||||||||| |||| | | ||||||| || ||| ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
22077258 |
taggaagtaataagagaatattgtgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt |
22077160 |
T |
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| Q |
212 |
gggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
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|| |||| | ||||||||||||||| |
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| T |
22077159 |
ggaagaaactgatttcaatgtgtaac |
22077134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 40447036 - 40446895
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
| |
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|||||| ||||||||||||| ||||| |||| | | ||||||| ||| | | ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
40447036 |
taggaagtaataagagaatactgtgagaggga-acaatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt |
40446938 |
T |
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| Q |
212 |
gggagaatgtaatttcaatgtgtaacagactcaacttattgat |
254 |
Q |
| |
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|| |||| | ||||||||||||||| || ||||| |||||| |
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| T |
40446937 |
ggaagaaactgatttcaatgtgtaactcacccaactaattgat |
40446895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 68902 - 68778
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
| |
|
|||||| |||||||||||||||| || |||| | | ||||||| || ||| ||||| ||| |||||||| |||| | ||||||||||||||||| | |
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| T |
68902 |
taggaagtaataagagaatattgcgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt |
68804 |
T |
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| Q |
212 |
gggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
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|| |||| | ||||||||||||||| |
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| T |
68803 |
ggaagaaactgatttcaatgtgtaac |
68778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 40458446 - 40458381
Alignment:
| Q |
172 |
ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
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|||||||||| ||||||||||||||| ||||| |||||||| ||| || |||| |||||||||| |
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| T |
40458446 |
ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaac |
40458381 |
T |
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