View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12978_low_25 (Length: 248)

Name: NF12978_low_25
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12978_low_25
NF12978_low_25
[»] chr6 (7 HSPs)
chr6 (18-229)||(19266863-19267074)
chr6 (44-221)||(2919709-2919886)
chr6 (33-221)||(6689446-6689634)
chr6 (43-221)||(14607431-14607609)
chr6 (36-221)||(21883510-21883695)
chr6 (57-221)||(18817186-18817350)
chr6 (57-221)||(24901955-24902119)
[»] chr7 (15 HSPs)
chr7 (33-221)||(2945062-2945250)
chr7 (36-221)||(30074307-30074492)
chr7 (36-221)||(33941305-33941490)
chr7 (57-221)||(10702828-10702992)
chr7 (58-221)||(32221683-32221845)
chr7 (36-221)||(1691902-1692089)
chr7 (72-221)||(38293483-38293632)
chr7 (57-199)||(43265631-43265773)
chr7 (36-221)||(46089860-46090044)
chr7 (87-221)||(24039500-24039634)
chr7 (33-141)||(24658672-24658780)
chr7 (139-221)||(3045030-3045111)
chr7 (37-97)||(8256802-8256862)
chr7 (33-78)||(1247842-1247887)
chr7 (33-77)||(8062595-8062639)
[»] chr2 (9 HSPs)
chr2 (37-221)||(11562259-11562443)
chr2 (57-221)||(6141567-6141731)
chr2 (33-221)||(3356761-3356949)
chr2 (57-221)||(18458869-18459033)
chr2 (33-200)||(32033224-32033389)
chr2 (57-221)||(4075840-4076004)
chr2 (107-221)||(18703329-18703443)
chr2 (122-205)||(2631739-2631821)
chr2 (57-143)||(4075716-4075801)
[»] chr1 (8 HSPs)
chr1 (36-221)||(25031198-25031382)
chr1 (36-221)||(6226935-6227120)
chr1 (36-221)||(9477878-9478063)
chr1 (80-221)||(9539292-9539433)
chr1 (80-200)||(10780869-10780989)
chr1 (44-221)||(34912571-34912749)
chr1 (57-221)||(42311302-42311456)
chr1 (57-221)||(1016680-1016844)
[»] chr3 (12 HSPs)
chr3 (57-221)||(7728727-7728891)
chr3 (36-221)||(23778510-23778693)
chr3 (36-221)||(24310129-24310314)
chr3 (36-221)||(36477710-36477895)
chr3 (57-221)||(8034862-8035026)
chr3 (83-221)||(26285500-26285638)
chr3 (37-220)||(38573230-38573413)
chr3 (33-221)||(36475718-36475907)
chr3 (57-195)||(7856772-7856907)
chr3 (57-221)||(26903424-26903588)
chr3 (57-221)||(36617452-36617616)
chr3 (44-151)||(25031993-25032101)
[»] chr8 (8 HSPs)
chr8 (33-199)||(29866415-29866581)
chr8 (57-223)||(32161058-32161224)
chr8 (33-223)||(2148631-2148821)
chr8 (44-221)||(24556572-24556749)
chr8 (44-221)||(6802428-6802605)
chr8 (57-221)||(45485870-45486034)
chr8 (57-221)||(44873560-44873724)
chr8 (33-78)||(3662232-3662277)
[»] chr5 (6 HSPs)
chr5 (36-221)||(36633658-36633843)
chr5 (72-218)||(36745228-36745374)
chr5 (36-199)||(43144816-43144979)
chr5 (33-223)||(25819327-25819516)
chr5 (57-152)||(17076356-17076451)
chr5 (150-220)||(30077995-30078064)
[»] chr4 (11 HSPs)
chr4 (33-200)||(4377532-4377699)
chr4 (36-200)||(5882677-5882841)
chr4 (44-218)||(33518336-33518509)
chr4 (80-221)||(50722981-50723122)
chr4 (77-221)||(24153802-24153946)
chr4 (36-130)||(2815826-2815920)
chr4 (112-221)||(2158909-2159018)
chr4 (57-218)||(36248146-36248307)
chr4 (57-153)||(2185314-2185410)
chr4 (68-144)||(49078355-49078431)
chr4 (151-223)||(2815920-2815992)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 19267074 - 19266863
Alignment:
Q  18 attatttgatataataatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19267074 attatttgatataataatcatagcatatgtgctgcattaatttgttttcacaagttttgcataaagatctgaaagcccttttaatttagcaaattttggg 19266975  T
Q  118 tcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19266974 tcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaata 19266875  T
Q  218 atttatacgtat 229  Q
    ||||||||||||    
T  19266874 atttatacgtat 19266863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 2919886 - 2919709
Alignment:
Q  44 atgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatt 143  Q
    ||||| |||||| ||||||||||| |||||||||| ||||||| ||||||| ||| || |||||||||||||||||||||||||||||||| |||||| |    
T  2919886 atgtgttgcatttatttgtttccataagttttgcacaaagatccgaaagccgtttcaacttagcaaattttgggtcaaatcgaacatttgttacataact 2919787  T
Q  144 tttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     |||||||||||| ||||||||| |||| ||||||||||||||| |||| ||||||| |||  ||| |||||||||||    
T  2919786 attaagttgatggtgtaacgccaattccaacacatctattaaatgattttgataaaactcatacatcctcaataattt 2919709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 6689446 - 6689634
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||| || | | |||||||| |||||||||| ||  |||||||||||||||||| || ||||||||||| ||| || || ||| ||||    
T  6689446 aatcatagcaaatgtgttgtacttatttgttttcacaagttttacacgaagatctgaaagccctttcaacttagcaaatttagggccagattgaaaattt 6689545  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     ||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||| ||||||||  ||||||||||    
T  6689546 ataacataatttttaagttgatggtgtaacgccactttcgacatatctataaaatcatttggataaaactcaatcatcttcaataattt 6689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 14607609 - 14607431
Alignment:
Q  43 tatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataat 142  Q
    |||||| |||| | ||||||||| ||| |||| | | |||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||||||    
T  14607609 tatgtgttgcacttatttgtttctacatgtttagaacaaagatctgaaagccaatttaacttagcaaattttgggtcatatcgaacatttgtaacataat 14607510  T
Q  143 ttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    | ||||||||||||  ||||| ||||||| |||  ||||  ||||||||||||||||| ||| |||  |||||||||||    
T  14607509 tcttaagttgatggtctaacgtcacttccaacatttctaaaaaatcatttggataaaagtcagtcaacctcaataattt 14607431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 21883510 - 21883695
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| || | | |||||||||||||||||||||| |||||||| |||||| ||  || ||| ||| |||||||||| || |||||||||||    
T  21883510 catagcaaatgtgttgtacttatttgtttccacaagttttgcacaaagatctaaaagccattacaacttaacaacttttgggtcagattgaacatttgta 21883609  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||| |||||||||  | |||||||||||| ||   ||||||| ||| ||||||||||||||||| |||| |||||||||||    
T  21883610 acataattcttaagttgagtgtgtaacgccactttcggagcatctataaaaacatttggataaaattcagtcatcctcaataattt 21883695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 18817186 - 18817350
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || || ||||||||||| ||| ||  ||||||| |||||||||| | ||||||   |    
T  18817186 atttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctg 18817285  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| ||||||||||||||||||  ||||||||||||||||  |||  ||| |||||||||||    
T  18817286 cgcaactccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataattt 18817350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 24901955 - 24902119
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || || ||||||||||| ||| ||  ||||||| |||||||||| | ||||||   |    
T  24901955 atttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattctgaagttgtctg 24902054  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| ||||||||||||||||||  ||||||||||||||||  |||  ||| |||||||||||    
T  24902055 cgcaactccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataattt 24902119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 2945250 - 2945062
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||| |||||| ||||| |||||||||||||| | ||||||||||||||||||| || |||||||||||| ||||| |||||||||||    
T  2945250 aatcatagcaaatgtgttgcatttatttgcttccacaagttttgtacaaagatctgaaagccctttcaacttagcaaattttcggtcagatcgaacattt 2945151  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||| |||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  2945150 gtaatataattcttaagttgatgacgtaacgtcacttccgacacatctataaaatcatttggataaaactcgatcatcctcaataattt 2945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 30074492 - 30074307
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||||| ||||||||||| ||||||| || |||||| |||||||||||| || |||||||||||| | ||| ||||||||||||||    
T  30074492 catagcaaatgtgttgcatttatttgtttccaaaagttttacacaaagatttgaaagccctttcaacttagcaaattttcgttcagatcgaacatttgta 30074393  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    | |||||| |||||||||||| |||||||||||||| |||||||||| |||| |||||||||| | ||| |||| |||||||||||    
T  30074392 atataattcttaagttgatggtgtaacgccacttccaacacatctataaaattatttggataatactcagtcatcctcaataattt 30074307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 33941490 - 33941305
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||| | |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||| ||    
T  33941490 catagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacatttata 33941391  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||| ||||||||| |  ||||||||||||||  ||||||||| ||||||||||| ||||  ||   |||||||||||||||    
T  33941390 acataattcttaagttgacgatgtaacgccacttccagcacatctataaaatcatttgggtaaatctcgcccattctcaataattt 33941305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 10702828 - 10702992
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||| || ||||||||||||||||||| ||||||| |  |    
T  10702828 atttgtttccacaagttttgcacaaagatctgaaagccttttcaacttagcaaattttgggtcagatagaacatttgtaacataattcttaagttcagtg 10702927  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     ||||||| ||||||  ||||||||  ||||||||||||||||| ||| | || |||||||||||    
T  10702928 tgtaacgcaacttccagcacatctagaaaatcatttggataaaactcactaatcctcaataattt 10702992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 32221845 - 32221683
Alignment:
Q  58 tttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggc 157  Q
    |||||||||||||||||| || || |||||||||||||||| || ||||||| |||| ||||| |||||||| | |||| |||||||||||||||||||     
T  32221845 tttgtttccacaagttttacacaaggatctgaaagccctttcaacttagcaatttttcggtcagatcgaacact-gtaatataatttttaagttgatggt 32221747  T
Q  158 gtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||||||||||||||| |||| ||||||||| |||||||  ||||| | || ||||||||    
T  32221746 gtaacgccacttccgacacaactataaaatcatttcgataaaacccaatcttccttaataattt 32221683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 1691902 - 1692089
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatt---tagcaaattttgggtcaaatcgaacattt 132  Q
    ||||||| ||||| |||| | ||||||||||| |||||||||| ||||||||||||| ||||| || |   ||||||||| ||||||| |||||||||||    
T  1691902 catagcaaatgtgttgcacttatttgtttccataagttttgcacaaagatctgaaagtcctttcaactaattagcaaattatgggtcagatcgaacattt 1692001  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||||||||| |||||||||  ||||||||||||||| | |||||| ||  ||| |||| || |||| ||| |||| |||||||||||    
T  1692002 gtaacataattcttaagttgagtgcgtaacgccacttctggcacatccatacaattattt-gaaaaaactcagtcatcctcaataattt 1692089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 38293632 - 38293483
Alignment:
Q  72 ttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttcc 171  Q
    ||||||| ||| ||||||||||||||  || ||| ||| |||||||||| || ||||||||||||||||||| |||||||||  ||||||||||||||||    
T  38293632 ttttgcacaaaaatctgaaagcccttacaacttaacaacttttgggtcagattgaacatttgtaacataattcttaagttgagtgcgtaacgccacttcc 38293533  T
Q  172 gacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |  |||||||| |||| |||||||||||  ||| |||| |||||||||||    
T  38293532 ggaacatctataaaattatttggataaagctcagtcatcctcaataattt 38293483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 43265773 - 43265631
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || || ||||||||||| ||| ||  ||||||| |||||||||||| ||||||   |    
T  43265773 atttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattttgaagttgtctg 43265674  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaa 199  Q
    || ||| ||||||||||||||||||  ||||||||||||||||    
T  43265673 cgcaactccacttccgacacatctacaaaatcatttggataaa 43265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 46090044 - 46089860
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||| | |||||||| ||||||||||||| ||| ||||||||| ||||| || |||||||||||  |||||| | ||||| || |     
T  46090044 catagcaaatgtgttgcacttatttgttttcacaagttttgcacaaa-atctgaaagtcctttcaacttagcaaatttcaggtcaagttgaacaattatt 46089946  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||||||  |||||||||||| ||||||||||||||||| | |||| |||| |||||| ||||  ||| |||| ||| |||||||    
T  46089945 acataattcctaagttgatggcataacgccacttccgacataactataaaattatttgggtaaacctcagtcatcctcgataattt 46089860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 24039500 - 24039634
Alignment:
Q  87 tgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaa 186  Q
    |||||||||||| || |||||||||||||||| | || ||| ||||||||||||||| |||||||||  | ||||  |||||| || ||||||||| |||    
T  24039500 tgaaagccctttcaacttagcaaattttgggttagatagaatatttgtaacataattcttaagttgagtgtgtaataccactttcggcacatctataaaa 24039599  T
Q  187 tcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||||||||| |||  ||| |||||||||||    
T  24039600 tcatttggataaaactcaggcatcctcaataattt 24039634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 24658672 - 24658780
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||| |||| | ||||||||||||||||||||   ||||||||||||||||||| || ||| |||||||| ||| |||| ||||||||    
T  24658672 aatcatagcaaatgtgttgcacttatttgtttccacaagttttgtgcaaagatctgaaagccctttcaacttaacaaattttcggttaaattgaacattt 24658771  T
Q  133 gtaacataa 141  Q
    |||||||||    
T  24658772 gtaacataa 24658780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 3045030 - 3045111
Alignment:
Q  139 taatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||| ||||||||||| ||||||| || || |||||||||||| |||| |||||||||||||||||  || |||||||||||    
T  3045030 taattcttaagttgatg-cgtaacgtcattttcgacacatctataaaattatttggataaaattcaacgatcctcaataattt 3045111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 8256802 - 8256862
Alignment:
Q  37 atagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagccctt 97  Q
    |||||| |||||||||| | |||| ||||||||||||||||| |||||||||||| |||||    
T  8256802 atagcaaatgtgctgcacttatttatttccacaagttttgcacaaagatctgaaacccctt 8256862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 1247887 - 1247842
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgca 78  Q
    |||||||||| ||||| |||| | ||||||||||||||||||||||    
T  1247887 aatcatagcaaatgtgttgcacttatttgtttccacaagttttgca 1247842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 8062595 - 8062639
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgc 77  Q
    |||||||||| ||||| |||| | |||||||||||||||||||||    
T  8062595 aatcatagcaaatgtgttgcacttatttgtttccacaagttttgc 8062639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 11562259 - 11562443
Alignment:
Q  37 atagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaa 136  Q
    |||||| || || |||||| |||||||||||||||||||||| ||| || |||||| | ||| || |||||||||||||||||||||| |||||||||||    
T  11562259 atagcaaatatgttgcatttatttgtttccacaagttttgcacaaatatatgaaagtcgtttcaacttagcaaattttgggtcaaatcaaacatttgtaa 11562358  T
Q  137 cataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||    
T  11562359 cataattcttaagttgatggcgtaacgccacttccgacacatctattaaatcatttagataaaattcagtcatcctccataattt 11562443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 6141567 - 6141731
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||| || ||||||||||||||||||| |||||||||  |    
T  6141567 atttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgtgtcagatagaacatttgtaacataattcttaagttgagtg 6141666  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||| |||| |||||||||||    
T  6141667 cgtaacgccacttccgatacatctataaaatcatttggataaaactcagtcatcctcaataattt 6141731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 3356949 - 3356761
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||| |||||| ||||||||||||| |||||||| |||||| |||||||||||| || ||| |||||||| ||||| ||| |||||||    
T  3356949 aatcatagcaaatgtgttgcatttatttgtttccacaggttttgcacaaagatatgaaagccctttcaacttaacaaattttcggtcagatcaaacattt 3356850  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     ||| ||||||  |||||||||||| |||||||||| ||||||||||||| |||||||||| |||||| ||| |||| |||||||||||    
T  3356849 ataatataattcataagttgatggcataacgccactaccgacacatctataaaatcatttgtataaaactcattcatcctcaataattt 3356761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 18458869 - 18459033
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||| | || ||||||||||||||||||| |||||||||  |    
T  18458869 atttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttaggttagatagaacatttgtaacataattattaagttgagtg 18458968  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     ||||||||||||||| ||||||||| ||||||||||||||||| ||| | || |||||||||||    
T  18458969 tgtaacgccacttccggcacatctataaaatcatttggataaaactcagtaatcctcaataattt 18459033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 32033224 - 32033389
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||| | |  |||  ||||||||| || |||||||||||||||||  |||||||||||    
T  32033224 aatcatagcaaatgtgttgcatttatttgtttccacaagttttgcaaagacttct--aagccctttcaacttagcaaattttgggtcggatcgaacattt 32033321  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaa 200  Q
     |||||||||| |||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||    
T  32033322 ataacataattcttaagttgatggcgaaacaccacttccgacacatctatacaatcatttggataaaa 32033389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 4075840 - 4076004
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||| ||||||||||| ||||| ||||||  ||||||||||| || || ||||||||||| ||| ||  ||||||| |||||||||| | ||||||   |    
T  4075840 atttatttccacaagtattgcacaaagattcgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctg 4075939  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| ||||||||||||||||||  ||||||||||||||||  |||  ||| |||||||||||    
T  4075940 cgcaactccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataattt 4076004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 18703443 - 18703329
Alignment:
Q  107 caaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaat 206  Q
    |||||||||||| | || |||||||| |||||||||||  |||||||||||| ||| |||||||  |||| ||||  ||||||||||||||||| |||      
T  18703443 caaattttgggttagattgaacatttataacataatttcgaagttgatggcgcaaccccacttctaacacttctaaaaaatcatttggataaaactcatc 18703344  T
Q  207 cattctcaataattt 221  Q
    ||  |||||||||||    
T  18703343 caacctcaataattt 18703329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 2631739 - 2631821
Alignment:
Q  122 atcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaa 205  Q
    ||||||||||| || |||||||||||||||||| |||| |||| |||| |||||||||||| |||||| ||| |||||| ||||    
T  2631739 atcgaacatttata-cataatttttaagttgatagcgttacgctactttcgacacatctataaaatcacttgaataaaactcaa 2631821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 4075716 - 4075801
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatt 143  Q
    |||||||||||||||| ||||| ||||||| | ||||||||| || || ||||||||||| ||| ||  ||||||| ||||||||||    
T  4075716 atttgtttccacaagtattgcacaaagatc-ggaagccctttcaactttgcaaattttggatcagatttaacatttctaacataatt 4075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 25031198 - 25031382
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||| | || ||||||| |||| ||||| ||||||||||||||    
T  25031198 catagcaaatgtgttgcatttatttgtttccacaagttttgcacaaagatctgaaagccctctgaacttagcaa-ttttaggtcagatcgaacatttgta 25031296  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||| | |||||||||  | ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  25031297 acataactcttaagttgagtgtgtaacgccacttccgacacatctataaaatcatttggataaaactcaatcatcctcaataattt 25031382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 6226935 - 6227120
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||| | |||||||||||||||||||||| ||||||||||||||||||  || ||| ||| |||||||||| ||||||||||| ||    
T  6226935 catagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacattttta 6227034  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||| |||||||||  | ||||||| |||||||  |||||||| |||| |||||||||||||||| |||| |||||||||||    
T  6227035 acataattcttaagttgagtgtgtaacgctacttccggaacatctataaaataatttggataaaattcagtcatcctcaataattt 6227120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 9477878 - 9478063
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||| | |||||||||||||||||||||  | |||||| |||||||||| || |||||||||||||||| | ||||||||||||||    
T  9477878 catagcaaatgtgttgcacttatttgtttccacaagttttgcgcatagatcttaaagccctttcaacttagcaaattttgggttagatcgaacatttgta 9477977  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     ||||||| |||||||||  ||||||| | ||||||| ||||||||| ||||||||||||||||| ||| |||| |||||||||||    
T  9477978 ccataattcttaagttgacagcgtaacactacttccggcacatctataaaatcatttggataaaactcagtcatactcaataattt 9478063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 9539433 - 9539292
Alignment:
Q  80 aaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatc 179  Q
    ||||||||| |||||| || || |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||    
T  9539433 aaagatctggaagccccttcaacttagcaaattttggatcagatcgaacatttgtaacataattcttaagttgatggcataacgccacttccaacacttc 9539334  T
Q  180 tattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||| |||| |||||||||||| ||||||||||||||||||||    
T  9539333 tataaaattatttggataaaactcaatcattctcaataattt 9539292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 10780989 - 10780869
Alignment:
Q  80 aaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatc 179  Q
    ||||||||||||| ||||| || |||||||||||| ||||| ||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||    
T  10780989 aaagatctgaaagtcctttcaacttagcaaattttaggtcagatcgaacatatgtaacataattattaagttgagtgcgtaacgccactttcgacacatc 10780890  T
Q  180 tattaaatcatttggataaaa 200  Q
    ||| |||| ||||||||||||    
T  10780889 tataaaattatttggataaaa 10780869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 34912571 - 34912749
Alignment:
Q  44 atgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaat-ttagcaaattttgggtcaaatcgaacatttgtaacataat 142  Q
    ||||| |||| | ||||||||||| |||||||| | ||||||||||||| | ||||||  ||||||||||||  || | || |||||||| |||||||||    
T  34912571 atgtgttgcacttatttgtttccagaagttttggacaaagatctgaaagtcattttaaacttagcaaattttaagttagattgaacatttataacataat 34912670  T
Q  143 ttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |  ||||||||||| ||||||||||||||   |||||||| |||||||||||||||| ||||| ||| |||||||||||    
T  34912671 tcctaagttgatggtgtaacgccacttccagaacatctataaaatcatttggataaatttcaaccatcctcaataattt 34912749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 42311456 - 42311302
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||           ||||||||||||||||||   |||||||  |    
T  42311456 atttgtttccacaagttttgcataaagatctaaaagccctttgaacttagcaaatttta----------aacatttgtaacataattcacaagttgagtg 42311367  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||| |||  ||| |||||||||||    
T  42311366 cgtaacgtcacttccgacatatctataaaatcatttggataaaactcagacatcctcaataattt 42311302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 1016844 - 1016680
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || || | ||||||||| ||| ||  ||||||| |||||||||| | ||||||   |    
T  1016844 atttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgaaaattttggatcagatttaacatttctaacataattatgaagttgtctg 1016745  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| ||||||||||||||||||  ||||||||||||||||  |||  ||| |||||||||||    
T  1016744 cgcaactccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataattt 1016680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 7728891 - 7728727
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||| ||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||| ||  |||||||||||||||||| |||||||||  |    
T  7728891 atttatttccacaagttttgcacaaagatctgaaaaccctttcaacttagcaaattttgggtcagatataacatttgtaacataattcttaagttgagtg 7728792  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    | |||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||    
T  7728791 cataacgccacttccgacacatctataaaatcatttggataaaactcagttattctcaataattt 7728727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 23778510 - 23778693
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||||| ||||||||||||||||||  || |||||||| |||||||||| || ||| |||||||||||||| |||||||||||| |    
T  23778510 catagcaaatgtgttgcatttatttgtttccacaagttt--cacaaagatcttaaagccctttcaacttaacaaattttgggtcagatcgaacatttgca 23778607  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||| ||||||||| || |||||| |||||||| ||||||||| ||||||||||||||||| ||| |||| |||||||||||    
T  23778608 acataattcttaagttgacggggtaacgtcacttccggcacatctataaaatcatttggataaaactcagtcatcctcaataattt 23778693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 24310129 - 24310314
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| |||||  ||| | |||||||||||||||||||||| | ||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||    
T  24310129 catagcaaatgtgtcgcacttatttgtttccacaagttttgcacacagatctgaaagccctttcaacatagcaaattttgagtcagatcgaacatttgta 24310228  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||| ||||||||   | |||| |||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  24310229 acataattcttaagttgcgtgtgtaatgccacttccggcacatctataaaatcatttggataaaactcaaccattctcaataattt 24310314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 36477895 - 36477710
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||| | |||| | |||| ||| |||| |||||||| |||||| |||||||||||| || |||||||||||||||||| ||||||||||||||    
T  36477895 catagcaaatgcgttgcacttatttattttcacatgttttgcacaaagatatgaaagccctttcaacttagcaaattttgggtcagatcgaacatttgta 36477796  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    |||||||| |||||||||  | |||||||||||| || ||||||||| |||| |||| ||||||| |||||||| |||||||||||    
T  36477795 acataattcttaagttgagtgtgtaacgccactttcggcacatctataaaattattttgataaaactcaatcatcctcaataattt 36477710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 8034862 - 8035026
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||||| || |||||||||||| | |||| |||||||||  |    
T  8034862 atttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttaggtcacatagaacatttgtaatacaattcttaagttgagtg 8034961  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     || ||||||||| |||||||||||| ||||||||||||||||| | | |||| |||||||||||    
T  8034962 tgtgacgccactttcgacacatctataaaatcatttggataaaactgagtcatcctcaataattt 8035026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 26285638 - 26285500
Alignment:
Q  83 gatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatctat 182  Q
    |||||||||||||||| || |||| ||||||| ||||| |||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||    
T  26285638 gatctgaaagccctttcaacttagtaaatttttggtcagatcgaaaatttgtaacataattattaagttgacggcgtaacaccacttccgacacatttat 26285539  T
Q  183 taaatcatttggataaaattcaatcattctcaataattt 221  Q
     ||||||||||||||||| |||| ||| |||||||||||    
T  26285538 aaaatcatttggataaaactcaaccatcctcaataattt 26285500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 38573230 - 38573413
Alignment:
Q  37 atagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaa 136  Q
    |||||| ||||| |||| | |||||||||||||||||||||| |||||| |||||||||||  || ||| ||| |||||||||| ||||||||| |||||    
T  38573230 atagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatttgaaagcccttacaacttaacaacttttgggtcagatcgaacatctgtaa 38573329  T
Q  137 cataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataatt 220  Q
    ||||||| ||||| |||  ||||||||| |||||||  |||||||| ||||  ||| |||||||||||  ||| ||||||||||    
T  38573330 cataattcttaagctgagtgcgtaacgctacttccggaacatctataaaattgttttgataaaattcagccatcctcaataatt 38573413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 36475718 - 36475907
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttg-ggtcaaatcgaacatt 131  Q
    ||||||| || ||||| |||| |  ||||||||||||| ||||| | |||||| |||||||||||| || ||||||| ||||  ||||||||  ||||||    
T  36475718 aatcataacaaatgtgttgcacttgtttgtttccacaaattttggacaaagatttgaaagccctttcaacttagcaatttttttggtcaaattaaacatt 36475817  T
Q  132 tgtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||||||||||  ||||||||||| |||||||||| |||| |||| || | ||||||||||||||||| ||| |||| |||||||||||    
T  36475818 tgtaacataattcctaagttgatggtgtaacgccacatccggcacacctgtaaaatcatttggataaaactcagtcatcctcaataattt 36475907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 7856772 - 7856907
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||  |||| |||| ||||       
T  7856772 atttgtttccacaagttttgcacaaagatctgaaagcccttttaacttag-aaatgttgggtcagatcgaacatttgtaac--aattcttaaattgagtt 7856868  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttgga 195  Q
    |||||| ||||||||| ||||||||| ||||||||||||    
T  7856869 cgtaacaccacttccggcacatctataaaatcatttgga 7856907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 26903424 - 26903588
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || || ||||||||||| ||| ||  ||||||| |||||||||| | ||||||   |    
T  26903424 atttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctg 26903523  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| ||||||||||||||||||  ||||||||||||||||  |||  ||| |||||||||||    
T  26903524 cgcaactccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataattt 26903588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 36617616 - 36617452
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || || ||||||||||| ||| ||  ||||||| |||||||||| | ||||||   |    
T  36617616 atttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctg 36617517  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| ||||||||||||||||||  ||||||||||||||||  |||  ||| |||||||||||    
T  36617516 cgcaactccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataattt 36617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 25032101 - 25031993
Alignment:
Q  44 atgtgctgcattaatttgtttccacaagt-tttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataat 142  Q
    ||||| |||||| |||||||||||||||| |||||| ||||||||||||||| ||| || ||  |||||||||| | |||| ||||||||||||||||||    
T  25032101 atgtgttgcatttatttgtttccacaagtatttgcacaaagatctgaaagccgtttcaacttgccaaattttggattaaattgaacatttgtaacataat 25032002  T
Q  143 ttttaagtt 151  Q
    | |||||||    
T  25032001 tcttaagtt 25031993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 29866415 - 29866581
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||| ||| || |||||||||||||||||||||| |||||||||||| |||||| || |||||||||||| ||||| | |||||||||    
T  29866415 aatcatagcaaatgtgttgcgtttatttgtttccacaagttttgcacaaagatctgaaaaccctttcaacttagcaaattttcggtcagaacgaacattt 29866514  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaa 199  Q
    |||| |||||| |||||||||||| |||| | |||||||||||||||||| ||||||||||||||||    
T  29866515 gtaatataattcttaagttgatggtgtaatgtcacttccgacacatctataaaatcatttggataaa 29866581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 32161224 - 32161058
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  32161224 atttgtttccataagttttgcacaaaaatctgaaagtcctttcaatttagcaaattttgggtcagattgaacatttgtaacataattcttaagttgatgg 32161125  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataatttat 223  Q
    |||||| ||||||  || |||||||| ||||||||||| ||||| |||||||   ||||||||||||    
T  32161124 cgtaacaccacttttgatacatctataaaatcatttgggtaaaagtcaatcaccttcaataatttat 32161058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 2148631 - 2148821
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||| | ||||| |||| | |||||||| ||||||||||||| |||||||||||||||||||  | || ||||||||||||||| ||  |||||||    
T  2148631 aatcatagaaaatgtgttgcacttatttgttttcacaagttttgcacaaagatctgaaagccctttacactttgcaaattttgggtcagatttaacattt 2148730  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataatttat 223  Q
     |||||||||| | |||||||||||| ||||||||||  | ||||| ||  |||||||||||||||| ||| ||||| |||||||||||||    
T  2148731 ataacataattctgaagttgatggcgcaacgccacttatggcacatttaaaaaatcatttggataaagttcgatcatcctcaataatttat 2148821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 24556749 - 24556572
Alignment:
Q  44 atgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatt 143  Q
    ||||| |||| | |||||||| ||||||||||||| |||| | |||||||||||| || ||||||||| ||| |||| || |||||||| ||||||||||    
T  24556749 atgtgttgcacttatttgttttcacaagttttgcacaaagttatgaaagccctttcaacttagcaaatcttgagtcagattgaacatttataacataatt 24556650  T
Q  144 tttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
      ||| ||||||||||||||||||||||  ||| ||||  ||||||||||||||||||||| |||| |||||||||||    
T  24556649 cctaacttgatggcgtaacgccacttccaccacttctacaaaatcatttggataaaattcagtcatcctcaataattt 24556572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 6802605 - 6802428
Alignment:
Q  44 atgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatt 143  Q
    ||||| |||||| | ||||||||||| |||||||| ||| || |||| | |||||  | || ||||||||||||||| || |||||||| ||||||||||    
T  6802605 atgtgttgcatttaattgtttccacatgttttgcacaaaaatatgaaggtcctttcgacttggcaaattttgggtcagattgaacatttataacataatt 6802506  T
Q  144 tttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
      ||||||||||||||||| ||||||| |||||||| || |||||||||| |||||| |||| ||| || ||||||||    
T  6802505 cctaagttgatggcgtaacaccacttctgacacatccataaaatcatttgaataaaagtcaaccatccttaataattt 6802428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 45486034 - 45485870
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || || ||||||||||| ||| ||  ||||||| |||||||||| | ||||||   |    
T  45486034 atttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataattatgaagttgtctg 45485935  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| ||||||||||||||||||  ||||||||||||||||  |||  ||| |||||||||||    
T  45485934 cgcaactccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataattt 45485870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 44873560 - 44873724
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    ||||||||| || ||||||||| ||||||||||||  ||||| || |||  | ||||||| ||| |||||| || |||||||||||| |||||||||  |    
T  44873560 atttgtttctacgagttttgcacaaagatctgaaatgcctttcaacttaagacattttggatcagatcgaatatatgtaacataattcttaagttgagtg 44873659  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
     ||||| |||||| ||  |||||||| ||||||||||||||||| |||| |||  ||||||||||    
T  44873660 ggtaacaccactttcggtacatctataaaatcatttggataaaactcaaccatcttcaataattt 44873724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 3662232 - 3662277
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgca 78  Q
    |||||||||| |||||||||| | ||||||||||| ||||||||||    
T  3662232 aatcatagcaaatgtgctgcacttatttgtttccataagttttgca 3662277  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 36633843 - 36633658
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||||| |||||||||||||| ||||||| |||||| ||||||    ||  | |||||||||||||| |||||||||| |||||||    
T  36633843 catagcaaatgtgttgcatttatttgtttccacaaattttgcacaaagatgtgaaagtagattcgacttagcaaattttggatcaaatcgaatatttgta 36633744  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | | |||| |||||||||||    
T  36633743 acacaattcttaagttaatggcgtaacgccacttccggcacatctattaaatcatttggataaaacttagtcatcctcaataattt 36633658  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 36745228 - 36745374
Alignment:
Q  72 ttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttcc 171  Q
    ||||||| ||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||||||  |||||||||||||| |    
T  36745228 ttttgcacaaagatctgaaagccctttcaacttagcaaactttgggtcagatcgaacatttgtaacataattcttaagttgagtgcgtaacgccactttc 36745327  T
Q  172 gacacatctattaaatcatttggataaaattcaatcattctcaataa 218  Q
     |||||||||| |||||||||||||||||  || |||| ||||||||    
T  36745328 aacacatctataaaatcatttggataaaacccagtcatcctcaataa 36745374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 43144816 - 43144979
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| | |||| |||||||||||||||||||||| |||||| ||||| | |||| || |||||||||||| ||||| ||||||||||||||    
T  43144816 catagcaaatgtgttacatttatttgtttccacaagttttgcacaaagatttgaaaactctttcaacttagcaaattttcggtcagatcgaacatttgta 43144915  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaa 199  Q
    | |||||| |||||||||||  |||| | ||||||| |||||||||| ||||||||||||||||    
T  43144916 atataattcttaagttgatgttgtaatgtcacttccaacacatctatgaaatcatttggataaa 43144979  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 25819327 - 25819516
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||  |||| | |||||||||||||||||||||| |||||| || |  ||||||||| |||||||||||||| ||| ||  |||||||    
T  25819327 aatcatagcaaatgtattgcagttatttgtttccacaagttttgcacaaagatttggattcccttttaacttagcaaattttggatcagatttaacattt 25819426  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataatttat 223  Q
      ||||| |||| |||||||||| ||||||| || |||| ||| |||||  ||| ||||||||| ||||||| |||| |||||||||||||    
T  25819427 acaacattatttctaagttgatgacgtaacgtcagttccaacatatctacaaaaccatttggat-aaattcagtcatcctcaataatttat 25819516  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 17076451 - 17076356
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttg 152  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| || ||||| |||||||| ||| ||  ||||||  |||||||||| | ||||||    
T  17076451 atttgtttccacaagtattgcacaaagatccgaaagccctttcaacttagcgaattttggatcagatttaacattcctaacataattctgaagttg 17076356  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 30078064 - 30077995
Alignment:
Q  150 ttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataatt 220  Q
    ||||||| |||||||| |||| | ||||||||| |||| |||||||||||| ||| |||||||||||||||    
T  30078064 ttgatggtgtaacgccgcttcag-cacatctataaaattatttggataaaactcagtcattctcaataatt 30077995  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 4377532 - 4377699
Alignment:
Q  33 aatcatagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacattt 132  Q
    |||||||||| ||||| |||| | ||||||||||||||||  |||| ||||||||||||||||||| || || ||||||||||||||| ||||||||| |    
T  4377532 aatcatagcaaatgtgttgcacttatttgtttccacaagtcatgcacaaagatctgaaagccctttcaacttggcaaattttgggtcagatcgaacatct 4377631  T
Q  133 gtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaa 200  Q
    ||||||||||| |||||||||  ||||| |||||||| || ||||||||| |||| ||||||||||||    
T  4377632 gtaacataattcttaagttgagtgcgtatcgccactttcggcacatctataaaattatttggataaaa 4377699  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 5882677 - 5882841
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgta 135  Q
    ||||||| ||||| |||||| ||||||||||| | | |||||| |||||| ||||||||| || || |||||||||||| ||||| ||| ||||||| ||    
T  5882677 catagcaaatgtgttgcatttatttgtttccaaatgatttgcacaaagatatgaaagcccattcaacttagcaaattttcggtcagatcaaacattttta 5882776  T
Q  136 acataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaa 200  Q
    | |||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  5882777 atataattcttaagttgatggcgtaacgacacttccgacacatctatcaaattatttggataaaa 5882841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 33518336 - 33518509
Alignment:
Q  44 atgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatt 143  Q
    ||||| |||| | ||||||||||||||| |||||| ||| |||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  33518336 atgtgttgcacttatttgtttccacaagatttgcacaaatatctaaaagcccttttaacttagcaaattttgggtcagatcgaaca-ttgtaacataatt 33518434  T
Q  144 tttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataa 218  Q
     |||| ||||  | |||||||||||| |  ||||||||| ||||||||||||||||| ||| |||| ||||||||    
T  33518435 cttaaattgagtgtgtaacgccactttcagcacatctataaaatcatttggataaaactcagtcatcctcaataa 33518509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 50723122 - 50722981
Alignment:
Q  80 aaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatc 179  Q
    |||||||| |||| ||||| || ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||| | ||||||||  |||||     
T  50723122 aaagatcttaaagtcctttcaacttagcaaattttgggtcaaattgaacatttgtaacataatacttaagttgatggcgtagcaccacttccagcacatt 50723023  T
Q  180 tattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  50723022 tattaaatcatttggataaaactcgatcatcctcaataattt 50722981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 24153802 - 24153946
Alignment:
Q  77 cataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacac 176  Q
    ||||||||| || ||||||||| || || ||||||||||| ||| || |||||||| || |||||||  ||||||||||| ||||||||||||||| |||    
T  24153802 cataaagatttggaagccctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttccggcac 24153901  T
Q  177 atctattaaatcatttggataaaattcaatcattctcaataattt 221  Q
    || ||| |||| |||||||||||| |||||||| |||||||||||    
T  24153902 atttataaaattatttggataaaactcaatcatcctcaataattt 24153946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 2815826 - 2815920
Alignment:
Q  36 catagcatatgtgctgcattaatttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacat 130  Q
    ||||||| ||||| |||| | |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  2815826 catagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacat 2815920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 2158909 - 2159018
Alignment:
Q  112 tttgggtcaaatcgaacatttgtaacataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattc 211  Q
    ||||||| | || |||||||||||||||||    ||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||| ||||||    
T  2158909 tttgggttagattgaacatttgtaacataaaacctaagttgatggcgtaacgccacttcctgcacatctataaaatcatttggataaaactcagtcattc 2159008  T
Q  212 tcaataattt 221  Q
    ||||||||||    
T  2159009 tcaataattt 2159018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 36248146 - 36248307
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttgatgg 156  Q
    ||||||||||||||||||| || |||| ||| ||| | |||| || ||| |||||||| ||||| ||||||||| |||||||||| | ||||||| |  |    
T  36248146 atttgtttccacaagttttacacaaaggtctaaaaactctttcaacttaacaaattttaggtcagatcgaacatctgtaacataactcttaagttaagtg 36248245  T
Q  157 cgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataa 218  Q
    |||||| |||| | || ||||||||| ||||||||||||||||| ||| |||| ||||||||    
T  36248246 cgtaacaccaccttcggcacatctataaaatcatttggataaaactcagtcatcctcaataa 36248307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 2185314 - 2185410
Alignment:
Q  57 atttgtttccacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataatttttaagttga 153  Q
    |||||||| ||||||||||| | ||||||||||||| | ||| || ||| |||||||| ||||| || |||||||||||||||| || |||||||||    
T  2185314 atttgttttcacaagttttgtacaaagatctgaaagtcttttcaacttaccaaattttaggtcagatagaacatttgtaacatagttcttaagttga 2185410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 49078431 - 49078355
Alignment:
Q  68 caagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaacataattt 144  Q
    |||||||| ||||||||||||||||  |||| |  |  |||||||||| |||| ||||||||||| |||||||||||    
T  49078431 caagtttttcataaagatctgaaagttctttcagctgtgcaaattttgagtcacatcgaacatttctaacataattt 49078355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 2815920 - 2815992
Alignment:
Q  151 tgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataatttat 223  Q
    |||||||||||| ||||||||  ||| ||||| |||| |||||||||||| | | ||||  ||||||||||||    
T  2815920 tgatggcgtaacaccacttccagcacttctataaaattatttggataaaactaagtcatcttcaataatttat 2815992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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