View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_low_26 (Length: 247)
Name: NF12978_low_26
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 48528921 - 48529156
Alignment:
| Q |
1 |
caagacgtgataggtgaacaggtttgtctgctcaaagtcttagatgatacaaatcatatgttaccaagaatctggcacaccaacatgctttttaagtaca |
100 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
48528921 |
caagacgtgataggtgaacagttctgtctgctcaaagtcttagatgatacaaatcatttgttacctagaatatggcacaccaacatgctttttaaataca |
48529020 |
T |
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| Q |
101 |
actaaacacccaacatatacaattacaagactagaatg-aacataatttgcagtcctttttcaagtcaaacatgtttctgttattggcaaagtaatttat |
199 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48529021 |
actaaacaccaaacatatacaattacaagactagaatgaaacataatttgcagccctttttcaagtcaaacatgtttttgttattggcaaagtaatttat |
48529120 |
T |
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| Q |
200 |
caaatagaaagtattttaaacattgacatatatatt |
235 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
48529121 |
caaatagaaagtatttcaaacattgacatatatatt |
48529156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 48531683 - 48531858
Alignment:
| Q |
1 |
caagacgtgataggtgaacaggtttgtctgctcaaagtcttagatgatacaaatcatatgttaccaagaatctggcacaccaacatgctttttaagtaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48531683 |
caagacgtgataggtgaacaggtttgtctgctcaaagtcttatatgatacaaatcatttgttaccaagaatatggcacaccaacatgctttttaagtaca |
48531782 |
T |
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| Q |
101 |
actaaacacccaacatatacaattacaagactagaatgaacataatttgcagtcctttttcaagtcaaacatgttt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48531783 |
actaaacacccaacatatacaattacaagactagaatgaacataatttgcagtcctttttcaagtcaaacatgttt |
48531858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 48531969 - 48532020
Alignment:
| Q |
184 |
tggcaaagtaatttatcaaatagaaagtattttaaacattgacatatatatt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48531969 |
tggcaaagtaatttatcaaatagaaagtattttaaacattgacatatatatt |
48532020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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