View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12978_low_31 (Length: 203)
Name: NF12978_low_31
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 54345945 - 54345772
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54345945 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagttggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
54345846 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
54345845 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctatagacataagtgatccattgttag |
54345772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 27157155 - 27157328
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||||| || |||| |
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| T |
27157155 |
catcatcatcattaaggatcggaagcgcaagaatttgattaacagtgtcaactagcaagttacttatgaggaaatcaatgtttcaatctccaaaaagact |
27157254 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
27157255 |
aagaacatccctaaccgatagagttgtatccatgtaggcctggttacctatagacataagtgatccattgttag |
27157328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 42793657 - 42793560
Alignment:
| Q |
50 |
taacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggactaagaacatccctaaccgatagagttatatccatgtag |
147 |
Q |
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|
||||||||| | |||||||||| || || ||||||||||| | ||||||||| |||||| |||||||||| ||||| | ||||| ||||| |||||| |
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| T |
42793657 |
taacagtgtaatctggcaagttgttcataaggaaatcaatatcccaatctcctgaaggagtaagaacatctctaacagtaagagtaatatctatgtag |
42793560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 23722497 - 23722324
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
23722497 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgagaaaatcaatgttccaatctccagaaggact |
23722398 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23722397 |
aagaacatcccttaccgatagagttatatccatgtaggtctggttacctatagacataagtgatccattgttag |
23722324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 23948908 - 23948735
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23948908 |
catcatcatcattagggattgaaagcgcaagaatttgattaacagtgttagttggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
23948809 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23948808 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctatagacataagtgatccattgttag |
23948735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 5307926 - 5307753
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
5307926 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagttggcaagttatttatgcggaaatcaatgttccaatctctagaaggact |
5307827 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5307826 |
aagaacatccctaaccaatagagttatatccatgtaggtctggttacctatagacataagtgatccattgttag |
5307753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 50953531 - 50953704
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || ||||||| |
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|
| T |
50953531 |
catcatcatcattagggatcagaagcgcaagaatttgattaacagtgtcagctgtcaagttatttatgaggaaattaatgttccaatcttcaaaaggact |
50953630 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
50953631 |
aagaacatccctaactgatagagttgtatccatgtaggcctggttacctatagacataagtgatccattgttag |
50953704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 8020732 - 8020905
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8020732 |
catcatcatcattagggattgaaagcgcaagaatttgattaacagtgttagttggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
8020831 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
8020832 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctatagacataagtgattcattgttag |
8020905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 25712670 - 25712506
Alignment:
| Q |
20 |
cattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggactaagaacatc |
119 |
Q |
| |
|
||||||||| |||||| ||||||| ||| |||||||||| | ||||||||| || || ||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
25712670 |
cattagggaccggaagcacaagaatctgactaacagtgtctgttggcaagttgttcataaggaaatcagtgttccaatctccagaaggattaagaacatc |
25712571 |
T |
|
| Q |
120 |
cctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
||||||| ||||| || |||||| |||| || ||||||| |||| ||||||| ||||||||||| |
|
|
| T |
25712570 |
cctaaccaatagaattgtatccacataggcctcgttacctatagatataagtgctccattgttag |
25712506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 24472528 - 24472453
Alignment:
| Q |
50 |
taacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggactaagaacatccctaac |
125 |
Q |
| |
|
||||||||| | ||||||||||| | || ||||||||||| | ||||||||| |||||| |||||||||| ||||| |
|
|
| T |
24472528 |
taacagtgtaatctggcaagttaatcataaggaaatcaatatcccaatctcctgaaggagtaagaacatctctaac |
24472453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 34390793 - 34390965
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34390793 |
catcatcatcattagggatcggaagcgtaataatttgattaacggtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
34390892 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgtta |
183 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
34390893 |
aagaacatccctaaccgatagagttgtatccatgtaggcctggttacctatagacataagtgatccattgtta |
34390965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 26617713 - 26617882
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
26617713 |
catcatcatcattagggatcggaagcgcaagaatttgattaacagtgtcagttggcaagttgtttatgaggaaatcaatgttccaatctctagaaggact |
26617812 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattg |
180 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
26617813 |
aagaacatccctaaccgatagagttgtatccatgtaggcctggttacctatagacataagtgatcaattg |
26617882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 7306070 - 7306243
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7306070 |
catcatcatcattagggatcgaaagtgcaagaatttgattaacagtgtcagctgacaagttgtttatgaggaaatcaatgttccaatctccagaaggact |
7306169 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtaggtctggttacctgtagacataagtgatccattgttag |
184 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
7306170 |
aagaacatccctaaccgatagagttgtatccatgtacgcttggttacctgtagacataagtgatccattgttag |
7306243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 40197375 - 40197512
Alignment:
| Q |
11 |
catcatcatcattagggattggaagcgcaagaatttgattaacagtgtcagctggcaagttatttatgaggaaatcaatgttccaatctccagaaggact |
110 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| ||||| ||| || ||| ||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
40197375 |
catcatcatcattagggaccgaaagcgcaagaatttgactaacattgttagttggaaagttgttcataaggaaatcaatgttccaatctccagaaggact |
40197474 |
T |
|
| Q |
111 |
aagaacatccctaaccgatagagttatatccatgtagg |
148 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
40197475 |
aagaacatccctaaccgatatagttgtatccatgtagg |
40197512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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