View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_low_4 (Length: 723)
Name: NF12978_low_4
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 20 - 713
Target Start/End: Original strand, 36135866 - 36136557
Alignment:
| Q |
20 |
tactgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagcattttgttttcaaacacatcaatat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36135866 |
tactgctcacagaaagctttcttattgcttgtaagttctgttatggttggtgcaaccaggaaaatcacgagaagcattttgtttccaaacacatcaatat |
36135965 |
T |
|
| Q |
120 |
tattgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctttttatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
36135966 |
tattgattctctgcgggcaagcaacaacctggggcgtagccgcgtagcatcagtaaaggtatataactttaaaaccttcatcggaacaattctttttatt |
36136065 |
T |
|
| Q |
220 |
taagatgtttctgttacatacgtgtaagnnnnnnncgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatg |
319 |
Q |
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| T |
36136066 |
taagatgtttctgttacatacgtgtaagaaaaaaacgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatg |
36136165 |
T |
|
| Q |
320 |
atatttttccacttttgagtgtgatattttgcttgataaattaataaatgtattttctcccattaatgtaattttgataaacaaaatctccaagtataag |
419 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36136166 |
atatttttccacttttgagtgtgatattttgtttgataaattaataaatgtattttctcccattaatgtaattttgataaacaaaatctccaagcataag |
36136265 |
T |
|
| Q |
420 |
taactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtatcagcaaatctt |
519 |
Q |
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| T |
36136266 |
taactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtatcagcaaatctt |
36136365 |
T |
|
| Q |
520 |
ctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaaatgagaaagtggaccgacctattcttgttgcttctgtattcaattttc |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36136366 |
ctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaa--gagaaagtggaccgacctattcttgttgtttctgtattcaattttc |
36136463 |
T |
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| Q |
620 |
tagggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaacccggtatctatatggatatttctttgtggtcaatgtgc |
713 |
Q |
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| T |
36136464 |
tagggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgtgc |
36136557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 7e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 41337422 - 41337737
Alignment:
| Q |
22 |
ctgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagcattttgttttcaaacacatcaatatta |
121 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
41337422 |
ctgctcacagaaagctttcttattgcttcaaagttctgttatggttggcgcaaccagaaaaatcgagagaagcattttgtttccaaacacatcaatatta |
41337521 |
T |
|
| Q |
122 |
ttgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctttttattta |
221 |
Q |
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| T |
41337522 |
ttgatcctctgcaggaaaacaacaacctggg--------gcatagcatcagtagaggtatttcactttaaaaccttcattgaaacaattc-ttttatcaa |
41337612 |
T |
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| Q |
222 |
agatgtttctgttacatacgtgtaag-nnnnnnncgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatattcttaagagcaatga |
320 |
Q |
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||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |
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| T |
41337613 |
agatgattctgttacatacgtgtaagaaaaagaacgttgatttgttcgctgaatatagaaggtgtatgaagtgtctacagtatattcttaagagcattga |
41337712 |
T |
|
| Q |
321 |
tatttttccacttttgagtgtgata |
345 |
Q |
| |
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| T |
41337713 |
tatttttccacttttgagtgtgata |
41337737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 41337746 - 41337843
Alignment:
| Q |
384 |
aatgtaattttgataaacaaaatctccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
481 |
Q |
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|||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
41337746 |
aatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
41337843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 621 - 697
Target Start/End: Original strand, 41339373 - 41339449
Alignment:
| Q |
621 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaacccggtatctatatggatatttc |
697 |
Q |
| |
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|||||||||||||||||| |||||| |||||||| |||| |||||||||||||||| |||||||| |||| |||||| |
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| T |
41339373 |
agggaaaggttttccagccgtggtcgaaatcattgcagatggaaaaatgagcaaccaggtatctaaatggttatttc |
41339449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 712
Target Start/End: Original strand, 22629871 - 22629955
Alignment:
| Q |
625 |
aaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaacccggtatctatatggatatttctttgtggtcaatgtg |
712 |
Q |
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|||||||||||||| ||||| ||||||||||||| | |||| || |||| |||||||||||| | ||||||||||| ||||||| |
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| T |
22629871 |
aaaggttttccagccttggtcgaaatcattacaga---agaaattagaaaccgtgtatctatatggctctttctttgtggccaatgtg |
22629955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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