View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12978_low_6 (Length: 601)
Name: NF12978_low_6
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 553; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 4 - 584
Target Start/End: Original strand, 23948888 - 23949468
Alignment:
| Q |
4 |
caatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcagga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23948888 |
caatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcagga |
23948987 |
T |
|
| Q |
104 |
ttgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattctt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23948988 |
ttgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacgcacgagcgcattctt |
23949087 |
T |
|
| Q |
204 |
acaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgca |
303 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949088 |
acaaatttccaaaggagtaaatggggtggtggaatatctcctaattgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgca |
23949187 |
T |
|
| Q |
304 |
tccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23949188 |
tccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcaattgcagggattggttcttcaataacctcatcaa |
23949287 |
T |
|
| Q |
404 |
gaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgat |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949288 |
gaaagacattgggacgaacactttaagttggaagacaactttcatgacaacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgat |
23949387 |
T |
|
| Q |
504 |
tttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949388 |
tttattaggccgaacaacccaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
23949468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 23722474 - 23723057
Alignment:
| Q |
1 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23722474 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
23722573 |
T |
|
| Q |
101 |
ggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
23722574 |
ggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatgacccacatcgcatccaaacctttatttggttggctacgcacgagcgtatt |
23722673 |
T |
|
| Q |
201 |
cttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
300 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23722674 |
cttacaaatttcaaaaggagtaaatggggtggtggaatctctcctacttgtccgtgttgtggaaatgaagatgaaattgttcttcatgtgcttcgcgatt |
23722773 |
T |
|
| Q |
301 |
gcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcat |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23722774 |
gcatccacgctacccaagtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcat |
23722873 |
T |
|
| Q |
401 |
caagaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagct |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
23722874 |
caagaaagacattgggacgaacagtttaagttggaagacaactttcatgacgacatgttggtacttgtggaagtggaggaatgaaattatttttgaagct |
23722973 |
T |
|
| Q |
501 |
gattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
23722974 |
gattttattaggccgaacaacccaatttctttaatttgaagatttgtccaaaatattgaagattgtaacctgaagcatgttcat |
23723057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 57 - 584
Target Start/End: Complemental strand, 23085867 - 23085340
Alignment:
| Q |
57 |
acccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccac |
156 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23085867 |
acccagcatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgactttggagggtgactggaaaagtatttggaagtggcatggcccac |
23085768 |
T |
|
| Q |
157 |
atcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
23085767 |
atcgcatccaaacctttatttggttggctaagcacgagcgaattcttacaaattttcgaaggagtaaatggggtggtggaatctctcctacttgcacgtg |
23085668 |
T |
|
| Q |
257 |
ttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccatatgattttataactaat |
356 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23085667 |
ttatggaaatgaagatgaaattgttcttcatgtgcttcgcgattgcatctacgctactcaggtatggctttacattgttccatatgattttataactaat |
23085568 |
T |
|
| Q |
357 |
ttcttttctttcgattgcagggattggttcttcaataacctcatcaagaaagacattgggacgaacactttaagttggaagacaactttcatgataacat |
456 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23085567 |
ttcttttctttcgattgcaaggattggttcttcaataacctcaacaagaaagacattgggacgaacactttaagttggaagacaactttcatgacgacat |
23085468 |
T |
|
| Q |
457 |
gttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatat |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
23085467 |
gttggtacttgtggaagtggaggaataaaagtatttttgaagctgattttattaggtcgaacaacccaatttctattatttggagatttgtccaaaatat |
23085368 |
T |
|
| Q |
557 |
tgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
23085367 |
tgaagattgtaacctggagcatgttcat |
23085340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 215 - 584
Target Start/End: Original strand, 5308043 - 5308412
Alignment:
| Q |
215 |
aaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5308043 |
aaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaaatgttcttcatgtgcttcgcgattgcatccacgctacc |
5308142 |
T |
|
| Q |
315 |
caggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaagaaagacattg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5308143 |
caggtatggctttacatcgttccatatgattttataactaatttcttttctttcaattgcagggattggttcttcaataacctcatcaagaaagacattg |
5308242 |
T |
|
| Q |
415 |
ggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggcc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5308243 |
ggacgaacactttaagttggaagacaactttcatgacaacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggcc |
5308342 |
T |
|
| Q |
515 |
gaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5308343 |
gaacaacccaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
5308412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 277 - 584
Target Start/End: Complemental strand, 50953304 - 50952997
Alignment:
| Q |
277 |
ctgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcag |
376 |
Q |
| |
|
||||||||||||||||| | |||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50953304 |
ctgttcttcatgtgctttgtgattgcatttatgctgcccatgtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcag |
50953205 |
T |
|
| Q |
377 |
ggattggttcttcaataacctcatcaagaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtgg |
476 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
50953204 |
ggattggttcttcaataacctcaacaagaaagacattgggacaaacactttaagttggaagacaactttcatgacgacatgttggtacttatgaaagtgg |
50953105 |
T |
|
| Q |
477 |
aggaataaaactatttttgaagctgattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagc |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50953104 |
aggaataaaactatttttgaagctgattttattaggccgaacaacccaaattctttaatttggagatttgtccaaaatattgaagattgtaacctggagc |
50953005 |
T |
|
| Q |
577 |
atgttcat |
584 |
Q |
| |
|
|||||||| |
|
|
| T |
50953004 |
atgttcat |
50952997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 50953549 - 50953304
Alignment:
| Q |
6 |
atccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggatt |
105 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
50953549 |
atccctaatgatgatgatggtccatacactattgggtgggctggaaccaatacccaccatttcacagttcaaaatgcttattctttgcaatatcaggatt |
50953450 |
T |
|
| Q |
106 |
gcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttac |
205 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50953449 |
gcccgactttggagggtgactgaaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacgcacgagcgcattcttac |
50953350 |
T |
|
| Q |
206 |
aaatttccaaaggagcaaatggggtggtggaatctctcctacttgc |
251 |
Q |
| |
|
|||||| | |||||| ||| | | ||||||||||| |||||||||| |
|
|
| T |
50953349 |
aaattttcgaaggagtaaacgagttggtggaatctatcctacttgc |
50953304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 5307903 - 5308045
Alignment:
| Q |
1 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5307903 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
5308002 |
T |
|
| Q |
101 |
ggattgcccgattttggaaggtgactggaaaagtatttggaag |
143 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5308003 |
ggattttccgattttggaaggtgacaggaaaagtatttggaag |
5308045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 22065870 - 22065818
Alignment:
| Q |
345 |
tttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
397 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||| | ||||||||| |
|
|
| T |
22065870 |
tttataactaacttcttttcctttgattgcagggattggttttccaataacct |
22065818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 54345922 - 54346505
Alignment:
| Q |
1 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54345922 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
54346021 |
T |
|
| Q |
101 |
ggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
54346022 |
ggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacgcacgagcgcatt |
54346121 |
T |
|
| Q |
201 |
cttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54346122 |
cttacaaatttccaaaggagtaaatggggtggtggaatatctcctaattgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
54346221 |
T |
|
| Q |
301 |
gcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54346222 |
gcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcaattgcagggattggttcttcaataacctcat |
54346321 |
T |
|
| Q |
401 |
caagaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54346322 |
caagaaagacattgggacgaacactttaagttggaagacaactttcatgacaacatgttggtacttgtggaagtggagaaataaaactatttttgaagct |
54346421 |
T |
|
| Q |
501 |
gattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54346422 |
gattttattaggccgaacaacccaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
54346505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 27157178 - 27156595
Alignment:
| Q |
1 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
100 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27157178 |
ttccgatccttaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaaatgcttattctttgcaacatca |
27157079 |
T |
|
| Q |
101 |
ggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcatt |
200 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27157078 |
ggattgcccgactttggagggtgactggaaaagtatttggaagtggcatgacccacatcgcatccaaacctttatttggttggctacgcacgagcgcata |
27156979 |
T |
|
| Q |
201 |
cttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
300 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27156978 |
cttacaaatttccgaaggagtaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
27156879 |
T |
|
| Q |
301 |
gcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcat |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27156878 |
gcatctacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttcttttgattgcagggattggttcttcaataacctcaa |
27156779 |
T |
|
| Q |
401 |
caagaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagct |
500 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27156778 |
caagaaagatattgggacgaacactttaagttggaagataactttcatgacgacatgttggtacttgtggaagtggaggaataaaactatttttgaagct |
27156679 |
T |
|
| Q |
501 |
gattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27156678 |
gattttattaggacgaacaacccaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
27156595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 42793687 - 42794069
Alignment:
| Q |
15 |
gatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattt |
114 |
Q |
| |
|
||||| |||||||| || |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||| || | |
|
|
| T |
42793687 |
gatgaggatggtcctgatactattgggtggagtggaaccaatacccaccagttcacaattcaaagtgcttattctctgcaacatcagaattgtccaacgg |
42793786 |
T |
|
| Q |
115 |
tggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttcca |
214 |
Q |
| |
|
|||| ||||||||||| | | ||||||||||||| |||||||||||| | ||||| |||||||||||||||| || | ||| || ||||| ||||| | |
|
|
| T |
42793787 |
tggagggtgactggaagattctttggaagtggcacggcccacatcgcgttcaaacttttatttggttggctattcatgggcgaatccttactaatttgcg |
42793886 |
T |
|
| Q |
215 |
aaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacc |
314 |
Q |
| |
|
||| | | ||| |||| ||| || || | | ||||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |
|
|
| T |
42793887 |
aagaggtagatgaggtgttgggatttcccttgcttgcccatgttgtgggaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaact |
42793986 |
T |
|
| Q |
315 |
caggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
397 |
Q |
| |
|
|||||||||||| | || ||||| | || ||||||||||| |||||||| || ||||| ||||||||||||| ||||||||| |
|
|
| T |
42793987 |
caggtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtagggattggttctccaataacct |
42794069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 46427758 - 46428139
Alignment:
| Q |
16 |
atgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgatttt |
115 |
Q |
| |
|
|||| |||||||| || |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||| |||||| |||| || | | |
|
|
| T |
46427758 |
atgaggatggtcctgatactattgggtggagtggaaccaatacccaccagttcaaagttcaaagtgcttattctctgcagcatcagaattgtccaacggt |
46427857 |
T |
|
| Q |
116 |
ggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaa |
215 |
Q |
| |
|
||||||||||||||| | | ||||||||||||| | |||||||| | | ||||| |||||||||||||||| || | | | || ||||| ||||| | | |
|
|
| T |
46427858 |
ggaaggtgactggaagattctttggaagtggcacgacccacatcacgttcaaacttttatttggttggctattcatgggtgaatccttactaatttgcga |
46427957 |
T |
|
| Q |
216 |
aggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctaccc |
315 |
Q |
| |
|
|| || | |||||||| ||| || ||||| |||||||| |||||||| ||||| ||| ||||||| |||||||||||||| |||||||| || || || | |
|
|
| T |
46427958 |
agaagtagatggggtgttgggatttctccgacttgcccatgttgtgggaatgatgattaaactgtccttcatgtgcttcgtgattgcattcatgcaactc |
46428057 |
T |
|
| Q |
316 |
aggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
397 |
Q |
| |
|
||||||||||| | || ||||| | || ||||||||||| |||||||| || ||||| |||||||||| | ||||||||| |
|
|
| T |
46428058 |
aggtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtggggattggttttccaataacct |
46428139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 21 - 397
Target Start/End: Complemental strand, 54813240 - 54812864
Alignment:
| Q |
21 |
gatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattttggaag |
120 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||| || | |||| | |
|
|
| T |
54813240 |
gatggtcctgatactattgggtggagtggaaccaatacccaccagttcacagttcaaagtgcttattctctgcagcatcaaaattgtccaacggtggagg |
54813141 |
T |
|
| Q |
121 |
gtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaaaggag |
220 |
Q |
| |
|
| |||||||| | | ||||||||||||| ||||||||| || | ||||| |||||||||||||||| || ||| || ||||| | ||| | ||| || |
|
|
| T |
54813140 |
gggactggaagattctttggaagtggcacggcccacattgcgttcaaacttttatttggttggctattcataggcgaatccttactagtttgcgaagaag |
54813041 |
T |
|
| Q |
221 |
caaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggta |
320 |
Q |
| |
|
| |||||||| ||| || |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||| |
|
|
| T |
54813040 |
tagatggggtgttgggatttctcctacttgcccatgttgtgggaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggta |
54812941 |
T |
|
| Q |
321 |
tggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
397 |
Q |
| |
|
|||||| | || ||||| | | |||||||||| |||||||| || ||||| ||||||||||| | ||||||||| |
|
|
| T |
54812940 |
tggcttcatattgttccttccaacgttataactaacttcttttcctttgattgtagggattggttttccaataacct |
54812864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 506
Target Start/End: Complemental strand, 29173743 - 29173698
Alignment:
| Q |
461 |
gtacttgtggaagtggaggaataaaactatttttgaagctgatttt |
506 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
29173743 |
gtacatgtggatgtggaggaacaaaactatttttgaagatgatttt |
29173698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 32992667 - 32992715
Alignment:
| Q |
255 |
tgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgca |
303 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| | ||||||| |
|
|
| T |
32992667 |
tgttgtggaaatgctgacgaaactgttcttcatgtgctttgtgattgca |
32992715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 4 - 584
Target Start/End: Complemental strand, 8020752 - 8020173
Alignment:
| Q |
4 |
caatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcagga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8020752 |
caatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaaga |
8020653 |
T |
|
| Q |
104 |
ttgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattctt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
8020652 |
ttgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggatacgcacgagcgcattctt |
8020553 |
T |
|
| Q |
204 |
acaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgca |
303 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8020552 |
acaaatttccaaaggagtaa-tggggtggtggaatatctcctaattgcccgtattgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgca |
8020454 |
T |
|
| Q |
304 |
tccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8020453 |
tccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcaattgcagggattggttcttcaataacctcatcaa |
8020354 |
T |
|
| Q |
404 |
gaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgat |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8020353 |
gaaagacattgggacgaacactttaagttggaagacaactttcatgacaacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgat |
8020254 |
T |
|
| Q |
504 |
tttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8020253 |
tttattaggccgaacaacccaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
8020173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 578
Target Start/End: Original strand, 25712662 - 25713230
Alignment:
| Q |
7 |
tccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattcttt-gcaacatcaggatt |
105 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
25712662 |
tccctaatgttaatgatagtccaaacactattggctgggttggaaccaataccc----ttttacagttcaaagtgcttattcttttgcagcatcaggatt |
25712757 |
T |
|
| Q |
106 |
gcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttac |
205 |
Q |
| |
|
||||| | || | ||||||| ||||||| |||||||||||||||| |||||| | |||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
25712758 |
tcccgactatgaagggtgacttgaaaagtctttggaagtggcatgggccacattgtatccaaacctttatttggttggctacgcatgggcgcattcttac |
25712857 |
T |
|
| Q |
206 |
aaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatc |
305 |
Q |
| |
|
|||||||| |||||| | ||| ||||||||||| |||||||||| |||| ||||| |||||||||||||||| |||||| ||||| |||| |||| |||| |
|
|
| T |
25712858 |
aaatttccgaaggagtagatgaggtggtggaatgtctcctactttcccgagttgtcgaaatgaagatgaaaccgttcttaatgtgattcgtgattccatc |
25712957 |
T |
|
| Q |
306 |
cacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaaga |
405 |
Q |
| |
|
||| | || ||| ||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25712958 |
cacacaactcagatatggctttacatcgttccttatgattttataaattatttattttcttccgattgcagggattggttcttcaataacctcaacaaga |
25713057 |
T |
|
| Q |
406 |
aagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattt |
505 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
25713058 |
aatacattgggacgaacactttaagttggaagataactttcatgacgacaatttggtacttgtggaagtggaggaataaaactatttttgaaaatgagtt |
25713157 |
T |
|
| Q |
506 |
tattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcat |
578 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
25713158 |
cattaggccgaacaacccaatttctttaattcggagatttgtccaagatattgaagactgtaacttggagcat |
25713230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 224 - 584
Target Start/End: Complemental strand, 29214517 - 29214157
Alignment:
| Q |
224 |
atggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatgg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
29214517 |
atggggtggtggaatctctcctacttgcctgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgtgattgcatccacgctactcaggtatgg |
29214418 |
T |
|
| Q |
324 |
ctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaagaaagacattgggacgaaca |
423 |
Q |
| |
|
|||||| |||||| | | ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
29214417 |
atttacaccgttccttctaattttataactaattgtttttctttcaattacagggattggttcttcaataacctcaacaagaaagacattaggatgaaca |
29214318 |
T |
|
| Q |
424 |
ctttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggccgaacaactc |
523 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||||| |||| ||||||| |||||||| ||||||||||| || ||||||||||||||||||| | |
|
|
| T |
29214317 |
ctttaagttggaagttaactttcatgacgatgtgttggtacatgtgcaagtggaagaataaaaatatttttgaagttggttttattaggccgaacaaccc |
29214218 |
T |
|
| Q |
524 |
aatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||||| ||||| ||||||||| ||||| |
|
|
| T |
29214217 |
aatttctttaattggaagatttgtccaagatattgaagactgtaatttggagcattttcat |
29214157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 115 - 397
Target Start/End: Original strand, 24472749 - 24473031
Alignment:
| Q |
115 |
tggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttcca |
214 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||||| |||||||||||| | ||||| |||||||||||| ||| || | | | || ||||| |||| | |
|
|
| T |
24472749 |
tggagggtgactggaaaattctttggaagtggcacggcccacatcgcgttcaaacttttatttggttgactattcatgggtgaatccttacttatttgct |
24472848 |
T |
|
| Q |
215 |
aaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacc |
314 |
Q |
| |
|
||| || | |||||||| | | || |||||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||||| || || || |
|
|
| T |
24472849 |
aagaagtagatggggtgtttggatttctcctacttgcccatgttgtgggaatgatgatgaaactgtccttcacgtgcttcgtgattgcattcatgcaact |
24472948 |
T |
|
| Q |
315 |
caggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
397 |
Q |
| |
|
|||||||||||| | || ||||| | || ||||||||||| |||||||| || ||||| ||||||||||| | ||||||||| |
|
|
| T |
24472949 |
caggtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
24473031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 24472558 - 24472644
Alignment:
| Q |
15 |
gatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcag |
101 |
Q |
| |
|
||||| |||||||| || |||||||||||| |||||||||||||||| || || |||||||||||| ||||||| ||||||||||| |
|
|
| T |
24472558 |
gatgaggatggtcctgatactattgggtggagtggaaccaatacccatcagttgacagttcaaagttattattctctgcaacatcag |
24472644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 525 - 584
Target Start/End: Original strand, 48618645 - 48618704
Alignment:
| Q |
525 |
atttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
48618645 |
atttctttaatttagagatttgttcaaaatattgaagattgtaatctggaacatgttcat |
48618704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 45753436 - 45753388
Alignment:
| Q |
255 |
tgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgca |
303 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
45753436 |
tgttgtggaaatgccgacgaaactgttcttcatgtgcttcgtgattgca |
45753388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 8035236 - 8035302
Alignment:
| Q |
431 |
ttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaa |
497 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||| |||||||| ||| | || ||| ||||||||||| |
|
|
| T |
8035236 |
ttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaa |
8035302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 45034260 - 45034194
Alignment:
| Q |
431 |
ttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaa |
497 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| |||||||| ||| | || || ||||||||||| |
|
|
| T |
45034260 |
ttggcagactactttcatgataacatgttggtatttgtggaattggcgaaacaattctatttttgaa |
45034194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 40407964 - 40407891
Alignment:
| Q |
237 |
atctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgc |
310 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||| |||| |||||| ||||||||| || ||||||||||| |
|
|
| T |
40407964 |
atctctcctattttcccgtgttgtgggaatggagacgaaaaatttcttcctgtgcttcgtgactgcatccacgc |
40407891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 34390816 - 34390234
Alignment:
| Q |
1 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34390816 |
ttccgatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
34390717 |
T |
|
| Q |
101 |
ggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcatt |
200 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34390716 |
ggattgctcgactttggagggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacgcacgagcgcatt |
34390617 |
T |
|
| Q |
201 |
cttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
300 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34390616 |
cttacaaatttccgaaggagtaaatggg-tggtggaatctctcctacttgcctgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
34390518 |
T |
|
| Q |
301 |
gcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcat |
400 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34390517 |
gcatctacgctacccatgtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcaaggattggttcttcaataacctcaa |
34390418 |
T |
|
| Q |
401 |
caagaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagct |
500 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34390417 |
caagaaagacattgagacgaacactttaagttggaagacaactttcatgacgacatgttggtacttgtggaagtggaggaataaaactatttttgaagct |
34390318 |
T |
|
| Q |
501 |
gattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
34390317 |
cattttattacgccgaacaacccaatttctttaatttggagatttgtccaaaatattgaagatagtaacctggagcatgttcat |
34390234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 57 - 584
Target Start/End: Complemental strand, 36895372 - 36894845
Alignment:
| Q |
57 |
acccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccac |
156 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||||||||||||||||||| || || |||||| ||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
36895372 |
acccagcatttcacagttcaaagcgtttattctttgcaacatcaggatttcctgactttggagggtgactagaaaagtatttggaagtggcatggctcac |
36895273 |
T |
|
| Q |
157 |
atcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36895272 |
atcgcatccaaacctttatttggttggctacgcacgagcgcattcttacaaatttccgaaggagtaaatggggtggtggaatctctcctacttgcccgtg |
36895173 |
T |
|
| Q |
257 |
ttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccatatgattttataactaat |
356 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36895172 |
ttgtggaaatgaagatgaaattgtttttcatgtgcttcgcgattgcatctacgctactcaggtatggctttacatcgttccatatgattttgtaactaat |
36895073 |
T |
|
| Q |
357 |
ttcttttctttcgattgcagggattggttcttcaataacctcatcaagaaagacattgggacgaacactttaagttggaagacaactttcatgataacat |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||| |||||||||||||||| |||| |
|
|
| T |
36895072 |
ttcttttctttcgattgcagggattggttcttcaataacctcaacaagaaagacattgggacaaacgctttaatttgaaagacaactttcatgacgacat |
36894973 |
T |
|
| Q |
457 |
gttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatat |
556 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36894972 |
gttggtatttgtggaagtggaggaataaaagtattttggaagctgattttattaggccgaacaacccaatttctttaatttggagatttgtccaaaatac |
36894873 |
T |
|
| Q |
557 |
tgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
36894872 |
tgaagattgtaacctggagcatgttcat |
36894845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 51 - 263
Target Start/End: Original strand, 5614465 - 5614677
Alignment:
| Q |
51 |
accaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatg |
150 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||||||||| || ||||||||||| ||| | |||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
5614465 |
accaatatccatcatttcatagttcaaagtgcttattctttacagcatcaggattgatcgagtgtggagggtgactgaaaaagtctttggaagtggcatg |
5614564 |
T |
|
| Q |
151 |
gcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttg |
250 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | || | ||||||||||||||||| |||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
5614565 |
gcccacatcgcatccaaaccttcatttggttggttgtgcatgggcgcattcttacaaattattgaaggagtagatgggatggtggaatctctcctacttg |
5614664 |
T |
|
| Q |
251 |
cccgtgttgtgga |
263 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5614665 |
cccgtgttgtgga |
5614677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 28945950 - 28945884
Alignment:
| Q |
431 |
ttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaa |
497 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||| |||||||| ||| | || ||| ||||||||||| |
|
|
| T |
28945950 |
ttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaa |
28945884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 26617736 - 26617153
Alignment:
| Q |
1 |
ttccaatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26617736 |
ttccgatccctaatgatgatgatggtccagacactattgggtggggtggaaccaatatccaccatttcacagttcaaactgcttattctttgcaacatca |
26617637 |
T |
|
| Q |
101 |
ggattgcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcatt |
200 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26617636 |
ggattgcccgactttggagggtgactaaaaaagtatttggaagtggcatgggccacattgtatccaaacctttatttggttggctacgcacgagtgcatt |
26617537 |
T |
|
| Q |
201 |
cttacaaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgatt |
300 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
26617536 |
cttacaaatttccaaaggagtagatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactattcttcatgtgcttcgcggtt |
26617437 |
T |
|
| Q |
301 |
gcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcat |
400 |
Q |
| |
|
||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26617436 |
gcatctatgctactcaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcatggattggttcttcaataacctcaa |
26617337 |
T |
|
| Q |
401 |
caagaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26617336 |
caagaaagacattgggacgaacactttaagttggaagacaactttcatgacgacatgttggtacttgtgaaagtggaggaataaaactatttttgaagct |
26617237 |
T |
|
| Q |
501 |
gattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26617236 |
gattttattaggccgaacaacccaaattctttaatttggagatttgtccaaaatattgaagattgtaacctggagcatgttcat |
26617153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 21 - 397
Target Start/End: Original strand, 44144926 - 44145302
Alignment:
| Q |
21 |
gatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattttggaag |
120 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| || | |||| | |
|
|
| T |
44144926 |
gatggtcctgatactattgggtggagtggaaccaatacccaccagttcacagttcaaagtgcttattctctgcaacatcaaaattgtccaacggtggagg |
44145025 |
T |
|
| Q |
121 |
gtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaaaggag |
220 |
Q |
| |
|
|||||||||| | | ||||||||||||| |||||||||||| | ||||| |||||||||||||||| || | || || ||||| ||||| | ||| || |
|
|
| T |
44145026 |
gtgactggaagattctttggaagtggcacggcccacatcgcgttcaaacttttatttggttggctattcatggacgaatccttactaatttgcgaagaag |
44145125 |
T |
|
| Q |
221 |
caaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggta |
320 |
Q |
| |
|
| |||||||| ||| || ||||| |||||||| |||||||| ||||| ||||||| ||| |||||||||||||| |||||||| || || || |||||| |
|
|
| T |
44145126 |
tagatggggtgttgggatttctccaacttgcccatgttgtgggaatgatgatgaaattgtccttcatgtgcttcgtgattgcattcatgcaactcaggta |
44145225 |
T |
|
| Q |
321 |
tggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
397 |
Q |
| |
|
|||||| | || ||||| | || ||||||||||| |||||||| || ||||| ||||||||||| | ||||||||| |
|
|
| T |
44145226 |
tggcttcatattgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
44145302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 456956 - 456784
Alignment:
| Q |
412 |
ttgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattag |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456956 |
ttggaacgaacactttaagttggaagacaacttttatgacaacttgttggtacttataaaagtggaggaataaaactatttttgaagctgattttattag |
456857 |
T |
|
| Q |
512 |
gccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
456856 |
gccgaacaacccaatttctttaatttggagatatgtccaagatattgaagactgtaacttggagcatattcat |
456784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 541 - 584
Target Start/End: Original strand, 1635725 - 1635768
Alignment:
| Q |
541 |
gatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1635725 |
gatttgtccaaaatattgaagattgtaacttggagcatgttcat |
1635768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 9468493 - 9468541
Alignment:
| Q |
351 |
actaatttcttttctttcgattgcagggattggttcttcaataacctca |
399 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
9468493 |
actaatttcttttctttgaattgtagggattggatcttcaataacctca |
9468541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 41999809 - 41999875
Alignment:
| Q |
431 |
ttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaa |
497 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||| |||||||| ||| | || ||| ||||||||||| |
|
|
| T |
41999809 |
ttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaa |
41999875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 6 - 584
Target Start/End: Complemental strand, 7306088 - 7305510
Alignment:
| Q |
6 |
atccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggatt |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
7306088 |
atccctaatgatgatgatggtccagacgctattgggtggggtggaaccaatacccaccatttcacagttcaaagtgtttattctttgcagcatcgggatt |
7305989 |
T |
|
| Q |
106 |
gcccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttac |
205 |
Q |
| |
|
|||| | |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7305988 |
gcccaactttggagggtgactggaaaaatatttggaagtggcatagcccacatcgcatccaagcctttatttggttggctatgcacgagcgcattcttac |
7305889 |
T |
|
| Q |
206 |
aaatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatc |
305 |
Q |
| |
|
|||||| ||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7305888 |
aaatttttgaagaagtaaacgggatggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcacgtgcttcgcgattgcatc |
7305789 |
T |
|
| Q |
306 |
cacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaaga |
405 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7305788 |
tacgctactcaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcaacaaga |
7305689 |
T |
|
| Q |
406 |
aagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattt |
505 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7305688 |
aagccattgggacgaacactttaagttggaagacgactttcatgacatcatgttggtacttgtggaagtggaggaataaaactatttttgaagctggttt |
7305589 |
T |
|
| Q |
506 |
tattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
7305588 |
tattaggtagaacaacccaatttctttaatttggagatttgtccaagatattgaagattgtaacctggagcatgttcat |
7305510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 584
Target Start/End: Complemental strand, 40197392 - 40196816
Alignment:
| Q |
7 |
tccctaatgatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattg |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || |||||||| || |||||||||||||||||||| ||||||||| ||| | |||| ||||| |
|
|
| T |
40197392 |
tccctaatgatgatgatggtccatacactattgggtaggatggaaccattatccaccatttcacagttcaaattgcttattccttgtagtatcatgattg |
40197293 |
T |
|
| Q |
107 |
cccgattttggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttaca |
206 |
Q |
| |
|
| | | |||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| | || | | ||||||||||| |
|
|
| T |
40197292 |
cttggatgtggagggtgactggaaaagtctttggaagtggcatgatccacgtcgcatccaaacctttatttggttgattgtgcatgggtgcattcttaca |
40197193 |
T |
|
| Q |
207 |
aatttccaaaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatcc |
306 |
Q |
| |
|
||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||| |
|
|
| T |
40197192 |
aatttacgaaggagtggacggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaattgttcttcgtgtgctttgtgattgcatcc |
40197093 |
T |
|
| Q |
307 |
acgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaagaa |
406 |
Q |
| |
|
| || || | |||||||||||||||| || | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40197092 |
atgcaactcgggtatggctttacatcctttcttctgattttataactaatttcttttcttttgattgcagggattggttcttcaataacctcaacaagaa |
40196993 |
T |
|
| Q |
407 |
agacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgatttt |
506 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40196992 |
agacgttgggacgaacactttaagttggaagacaactttcatgacgatgtgttggtacttgtggaagtggaggaataaaactatttttgaagctga-ttt |
40196894 |
T |
|
| Q |
507 |
attaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| || || |||||||||| ||||||||||||||| ||||| |
|
|
| T |
40196893 |
cttaggccaaacaacccaatttctttaatttggagattcttctaagatattgaagaatgtaacttggagcatcttcat |
40196816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 325 - 584
Target Start/End: Complemental strand, 37307903 - 37307644
Alignment:
| Q |
325 |
tttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaagaaagacattgggacgaacac |
424 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||| | || |||||||||| |
|
|
| T |
37307903 |
tttacatcgttccttttcattttataactaatttcttttcttttgattgcagggattgattcttcaataacttcgacaagaaagtcgttaggacgaacac |
37307804 |
T |
|
| Q |
425 |
tttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggccgaacaactca |
524 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| ||||| |||| || | |||||||| || |
|
|
| T |
37307803 |
tttaaattgaaagacaactttcatgacgacatgttggtacttgtgaaagtggaggaatataactattttttaagctaatttcatccgctcgaacaaccca |
37307704 |
T |
|
| Q |
525 |
atttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
37307703 |
atttctttaattcggagattcgtccaagatattgaagactgtaacttggagcatcttcat |
37307644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 452 - 584
Target Start/End: Original strand, 13186526 - 13186658
Alignment:
| Q |
452 |
aacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggccgaacaactcaatttctttaatttggagatttgtccaa |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13186526 |
aacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattttattaggccgaacaacccaatttctttaatttggagatttgtccaa |
13186625 |
T |
|
| Q |
552 |
aatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13186626 |
aatattgaagattgtaacttggagcatgttcat |
13186658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 26381984 - 26381885
Alignment:
| Q |
300 |
tgcatccacgctacccaggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggttcttcaataacctca |
399 |
Q |
| |
|
||||| ||||| ||||| |||||| || | || ||||| | ||||||||||| |||||| |||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
26381984 |
tgcattcacgcaacccaagtatggtttcatattgttccttctgattttataaataatttattttcttttgattgcagggattgaattttcaataacctca |
26381885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 10281136 - 10281183
Alignment:
| Q |
451 |
taacatgttggtacttgtggaagtggaggaataaaactatttttgaag |
498 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
10281136 |
taacatgttggcacttgtggaagtggaggaataagagcatttttgaag |
10281183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 11996317 - 11996251
Alignment:
| Q |
431 |
ttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaa |
497 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||| |||||||| ||| | || ||| ||||||||||| |
|
|
| T |
11996317 |
ttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaa |
11996251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 3733732 - 3733659
Alignment:
| Q |
156 |
catcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaaaggagcaaatgggg |
229 |
Q |
| |
|
||||||||||| || || || ||||||||| |||| ||||| |||||||||||| | | |||||||||||||| |
|
|
| T |
3733732 |
catcgcatccagactttcatgtggttggctgcacatgagcgtattcttacaaatgttcgtaggagcaaatgggg |
3733659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 5e-76; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 391 - 563
Target Start/End: Complemental strand, 25729259 - 25729087
Alignment:
| Q |
391 |
ataacctcatcaagaaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactat |
490 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25729259 |
ataacctcaacaagaaagacattgggacaaacactttaagttggaagacaactttcatgacgatatgttggtacttgtggaagtggaggaataaaactat |
25729160 |
T |
|
| Q |
491 |
ttttgaagctgattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagat |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25729159 |
ttttgaagctgattttattaggccgaacaaccaaatttctttaatttggagatttgtccaaaatattgaagat |
25729087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 405 - 584
Target Start/End: Complemental strand, 34081346 - 34081167
Alignment:
| Q |
405 |
aaagacattgggacgaacactttaagttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgatt |
504 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
34081346 |
aaagacattgggacgaacactttaaatcaaaagacaactttcatgacgacgtgttggtacttgtgggagtcgaggaataaaactatttttgaagctgatt |
34081247 |
T |
|
| Q |
505 |
ttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaacttggagcatgttcat |
584 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34081246 |
ttattaagccgaataacccaatttctttaatttggagatttgtccaagatattgaagattgtaacttggagcatattcat |
34081167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 470 - 584
Target Start/End: Complemental strand, 18259681 - 18259567
Alignment:
| Q |
470 |
gaagtggaggaataaaactatttttgaagctgattttattaggccgaacaactcaatttctttaatttggagatttgtccaaaatattgaagattgtaac |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18259681 |
gaagtggaggaataaaactatttttgaagctgattttattaagccgaacaacccaatttctttaatttggagatttgtccaaaatattgaagattgtaac |
18259582 |
T |
|
| Q |
570 |
ttggagcatgttcat |
584 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18259581 |
ctggagcatgttcat |
18259567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 40 - 397
Target Start/End: Original strand, 18882606 - 18882963
Alignment:
| Q |
40 |
ggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattttggaaggtgactggaaaagtatttg |
139 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| || | |||| |||| |||||| | | |||| |
|
|
| T |
18882606 |
ggtggagtggaaccaatacccacgagttcacagttcaaagtgcttattctctgcaacaatagagttgtccaacggtggagggtggctggaagattctttg |
18882705 |
T |
|
| Q |
140 |
gaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttccaaaggagcaaatggggtggtggaatc |
239 |
Q |
| |
|
||||||||| |||||||||| | ||||| ||||||||||| |||| || | ||| || || || ||||| | ||| | | |||||||| ||| || |
|
|
| T |
18882706 |
gaagtggcacatcccacatcgcgttcaaacttttatttggtttgctattcatgggcgaatcctaactaatttgcgaagaactagatggggtgttgggatt |
18882805 |
T |
|
| Q |
240 |
tctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat |
339 |
Q |
| |
|
| |||||||||||| |||||||| ||| | ||||||| ||| |||||||||||| | || || || || || || |||||||||||| | || ||||| | |
|
|
| T |
18882806 |
tttcctacttgcccatgttgtgggaataatgatgaaaatgtccttcatgtgctttgtgactgtattcatgcaactcaggtatggcttcatattgttccct |
18882905 |
T |
|
| Q |
340 |
atgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
397 |
Q |
| |
|
||||||||||||||| |||||||| || || || ||||||||||| ||||||||||| |
|
|
| T |
18882906 |
ctgattttataactaacttcttttcctttgactgtagggattggtttttcaataacct |
18882963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 32216318 - 32216382
Alignment:
| Q |
344 |
ttttataactaatttcttttctttcgattgcagggattggttcttcaataacctcatcaagaaag |
408 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| | ||||||||||||| |||||||| |
|
|
| T |
32216318 |
ttttataactaatttcttttcttttgattgcatggattgaattttcaataacctcaacaagaaag |
32216382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 32386013 - 32386079
Alignment:
| Q |
431 |
ttggaagacaactttcatgataacatgttggtacttgtggaagtggaggaataaaactatttttgaa |
497 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||| |||||||| ||| | || ||| ||||||||||| |
|
|
| T |
32386013 |
ttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaa |
32386079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 1223959 - 1223589
Alignment:
| Q |
15 |
gatgatgatggtccagacactattgggtggggtggaaccaatacccaccatttcacagttcaaagtgcttattctttgcaacatcaggattgcccgattt |
114 |
Q |
| |
|
||||| |||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| |||| || | |
|
|
| T |
1223959 |
gatgaggatggtcctgatactattgggtggagtggaaccaatacccaccagttcacagttcaaaatgcttattctctgcagcatcaaaattgtccaacgg |
1223860 |
T |
|
| Q |
115 |
tggaaggtgactggaaaagtatttggaagtggcatggcccacatcgcatccaaacctttatttggttggctacacacgagcgcattcttacaaatttcca |
214 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||||| |||||||||||| | ||||| |||||||||||||||| || | ||| || ||||| ||||| | |
|
|
| T |
1223859 |
tggagggtgactggaaaattctttggaagtggcacggcccacatcgcgttcaaacttttatttggttggctattcatgggcgaatccttactaatttgcg |
1223760 |
T |
|
| Q |
215 |
aaggagcaaatggggtggtggaatctctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacc |
314 |
Q |
| |
|
||| || | |||||||| ||| || |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || || |
|
|
| T |
1223759 |
aagaagtagatggggtgttgggatttctcctacttgcccatgttgtggaaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaact |
1223660 |
T |
|
| Q |
315 |
caggtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcagggattggtt |
385 |
Q |
| |
|
|| ||||||||| | || ||||| | || ||||||||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
1223659 |
catgtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtagggattggtt |
1223589 |
T |
|
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