View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12978_low_7 (Length: 579)
Name: NF12978_low_7
Description: NF12978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12978_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 163 - 332
Target Start/End: Complemental strand, 9861854 - 9861696
Alignment:
| Q |
163 |
taaagcatgggttggttaggtttgaatttgaaaattcatgaacaaaatccaactgaaattgtactcaaagttagttgatgcaaagggaaagaagggtaaa |
262 |
Q |
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| T |
9861854 |
taaagcatgggttggttaagtttgaatttgaaaattcatgaacaaaattcaactgaaattgtactc-aggttaattgattcaaagggaaagaagggttaa |
9861756 |
T |
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| Q |
263 |
agaaaataacaacttaacaagtgactgtgtaatgtgttgcactgaactgagtcaagagggttaagtagag |
332 |
Q |
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| T |
9861755 |
agaaatt---aacttaacaagtgac-------tgtgttgcactgaactgagtcaagagggttaagtagag |
9861696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 9862321 - 9862256
Alignment:
| Q |
12 |
agagacaattgatatgattcattgcatgtataaatctttaattttatatttctctatatttagttt |
77 |
Q |
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| T |
9862321 |
agagacatttgatatgattcattgcatgtataaatctttaattttatatttctctatatttagttt |
9862256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 9861574 - 9861499
Alignment:
| Q |
411 |
cttctgtttgtctccaataaaagtcaatccacccgttccattttatttataggctttttctgcaagtttggaggagaa |
488 |
Q |
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| T |
9861574 |
cttctgtttgtgtccaataaaagtcaatcaaccagttccattttatt--taagctttttctgcaagtttgaaggagaa |
9861499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 9861947 - 9861906
Alignment:
| Q |
79 |
tgtcagtttcacagttagactaagaacaaaaaataataatta |
120 |
Q |
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| T |
9861947 |
tgtcagtttcaccgttagactaagaacaaaaaataataatta |
9861906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 9861675 - 9861634
Alignment:
| Q |
343 |
tggtcatgatcagatcttgtctttgccaatgttaaaggctgc |
384 |
Q |
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| T |
9861675 |
tggtcatgatcagatcctgtctttgtcaacgttaaaggctgc |
9861634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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