View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12979_high_17 (Length: 272)

Name: NF12979_high_17
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12979_high_17
NF12979_high_17
[»] chr5 (3 HSPs)
chr5 (109-250)||(17811789-17811930)
chr5 (157-250)||(32754691-32754784)
chr5 (18-136)||(16696472-16696590)
[»] chr3 (1 HSPs)
chr3 (141-250)||(46027690-46027799)
[»] chr6 (1 HSPs)
chr6 (146-250)||(719655-719759)
[»] chr4 (1 HSPs)
chr4 (146-250)||(34852154-34852258)
[»] chr1 (2 HSPs)
chr1 (141-220)||(15853941-15854020)
chr1 (166-250)||(32828605-32828689)
[»] scaffold0024 (1 HSPs)
scaffold0024 (178-250)||(61903-61975)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 17811789 - 17811930
Alignment:
Q  109 tagagcccgagggaagtatttttccaagtgacaacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagc 208  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  17811789 tagagcccgagggaagtatttttccaagtgataacacaacccaaaggctctccttcctctatgttctctcgccgccgtatccagctcatctctctaaagc 17811888  T
Q  209 ccaatcacgccgccctcccttcttgttccgtccagatgtaga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17811889 ccaatcacgccgccctcccttcttgttccgtccagatgtaga 17811930  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 32754784 - 32754691
Alignment:
Q  157 tctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 250  Q
    |||||||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32754784 tctccttcctctctcttctctcgcctccgtatccagctcatctctctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 32754691  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 16696590 - 16696472
Alignment:
Q  18 tttagttggactcttggttttgccttgccatgtttgtttatgtgcactgctattgtgttttactttgttggtactaaagtttatgcctatgtagagcccg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |  |||||| ||||||||||||| |||| ||||||||||||| ||||| ||||| |    
T  16696590 tttagttggactcttggttttgctttgccatgtttgtttatggtcgttgctatcgtgttttactttgctggtgctaaagtttatgcatatgttgagcctg 16696491  T
Q  118 agggaagtatttttccaag 136  Q
    |||||||||| ||| ||||    
T  16696490 agggaagtatattttcaag 16696472  T

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Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 46027690 - 46027799
Alignment:
Q  141 aacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtc 240  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46027690 aacacaacacaaacgctctccttcctctccgttctctcgccgccgtatccagctcatctttctaaagcccaatcatgccgccctcccttcttgttccgtc 46027789  T
Q  241 cagatgtaga 250  Q
     |||||||||    
T  46027790 tagatgtaga 46027799  T

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Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 719655 - 719759
Alignment:
Q  146 aacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagat 245  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  719655 aacacaaacgctctccttcctctctgttctctcgccgccgtatccagctcatctctctaaagcccaatcacgttgccctcccttcttgttccgtccagat 719754  T
Q  246 gtaga 250  Q
    |||||    
T  719755 gtaga 719759  T

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Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 34852258 - 34852154
Alignment:
Q  146 aacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagat 245  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  34852258 aacacaaacgctctccttcctctctgttctctcgacgccgtatccagctcatctctctaaagcccaatcacgtcgccctcccttcttgttccgtccagat 34852159  T
Q  246 gtaga 250  Q
    |||||    
T  34852158 gtaga 34852154  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 15854020 - 15853941
Alignment:
Q  141 aacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccg 220  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  15854020 aacacaacacaaacactctccttcctctctgttctctcgccgtcgtatccagctcatctctctaaatcccaatcacgccg 15853941  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 32828605 - 32828689
Alignment:
Q  166 tctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 250  Q
    ||||||||||||||||||||||| || ||||||| || |||||||||||  ||  |||||| ||||||||  |||||||||||||    
T  32828605 tctttgttctctcgccgccgtattcaactcatctctccaaagcccaatcctgctaccctcctttcttgttttgtccagatgtaga 32828689  T

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Target: scaffold0024 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 61903 - 61975
Alignment:
Q  178 cgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 250  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||| || |||||||    
T  61903 cgccgccgtatccaactcatctctcttaagcccaatcacgccgccctcccttcttgctccgttcaaatgtaga 61975  T

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