View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_high_25 (Length: 201)
Name: NF12979_high_25
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 42519057 - 42518924
Alignment:
| Q |
16 |
atgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggtt |
115 |
Q |
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| T |
42519057 |
atgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggtt |
42518958 |
T |
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| Q |
116 |
aatttttaatgaataaacacttggattaaaaata |
149 |
Q |
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| T |
42518957 |
aatttttaatgaataaacacttagattaaaaata |
42518924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 1240836 - 1240709
Alignment:
| Q |
16 |
atgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
1240836 |
atgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaa-aacatgtggtc |
1240738 |
T |
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| Q |
116 |
aatttttaatgaataaacacttggattaa |
144 |
Q |
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| T |
1240737 |
aattcttaatgaataaactcttagattaa |
1240709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 41972469 - 41972342
Alignment:
| Q |
16 |
atgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaatattatgtggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
41972469 |
atgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgctaaccaggtaaaaa-aacatgtggtt |
41972371 |
T |
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| Q |
116 |
aatttttaatgaataaacacttggattaa |
144 |
Q |
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|||| ||||||||||||| ||| |||||| |
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| T |
41972370 |
aattcttaatgaataaactcttagattaa |
41972342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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