View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_high_5 (Length: 654)
Name: NF12979_high_5
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 636
Target Start/End: Complemental strand, 40713595 - 40712973
Alignment:
| Q |
17 |
ttatactggaaagttttcaggaacgacaataaactaccgttaaaaagacatagcgagcagaagttaattgttg---ggagtgaacaagagttaactatct |
113 |
Q |
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| T |
40713595 |
ttatactggaaagttttcaggaaggacaataaactaccgttaaaaagacatagcgagcggaagttaattgttgttgggagtgaacaagagttaactatct |
40713496 |
T |
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| Q |
114 |
ttcgagatatttacgtattttcaaggtgttagggagcattcttgaattgaaaagagcaattttatgggcttgaaatttcaaacgggcttgttgcagcagg |
213 |
Q |
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| T |
40713495 |
cttgaaacatttacgtattttcaaggtgttagggagcattcttgaattgaaaagagcaattttatgggcttgaaatttcaaacgggcttgttgcagtagg |
40713396 |
T |
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| Q |
214 |
catgtacgagtcaatgaagaaaaatggagcacataagcacagtgtataaaataattgaagaaatctacctcctacactcctcaaataacatctctacccc |
313 |
Q |
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| T |
40713395 |
catgtacgagtcaatgaagaaaaatggagcacataagcacagtgtataaaataattgaagaaatctacctcctacactcctcaaataacatctctacccc |
40713296 |
T |
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| Q |
314 |
gcaaatgacttgaagtgcataaattacctttcctcttaataaataaacaaatacnnnnnnnnnnnnnnnnatgaattcaggaaagtcaatttgattttgc |
413 |
Q |
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| T |
40713295 |
gcaaatgacttgaagtgcataaattacctttcctcttaataaataaacaaatatttttatttttatttttatcaattcaggaaagtcaatttgattttgc |
40713196 |
T |
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| Q |
414 |
cagaagaaaattaggttccaacaatgttgaatgagactatgccacaatgataaatgagttttggcaaactcaagctttgaatttgcttcaatattaaggc |
513 |
Q |
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| T |
40713195 |
cagaagaaaattaggttccaacaatgttgaatgagactatgccacaatgataaatgagtgttggcaaactgaagctttgaatttgcttcaatattaaggc |
40713096 |
T |
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| Q |
514 |
atgtttattttatgaaaatattttccgcaaacatttgttaattttactaactaacaagaagacaataactcttgatgtgaaaatttgtctatatttttta |
613 |
Q |
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| T |
40713095 |
atgtttattttatgaaaatattttccgcaaacatttgttaattttactaactaacaagaagacgataactcttgatgtgaaaatttgtctatatttttta |
40712996 |
T |
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| Q |
614 |
gaaacaacgtaaacgcaaaaaga |
636 |
Q |
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| T |
40712995 |
gaaacaacgtaaacgcaaaaaga |
40712973 |
T |
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