View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_high_6 (Length: 626)
Name: NF12979_high_6
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 239 - 610
Target Start/End: Complemental strand, 17608495 - 17608124
Alignment:
| Q |
239 |
acctttctttgcgttcttgaatgtgtttcatctgagacttataatgactctcaatgaatttcttagcagcagcaaccctttccatggttaaggtggaaac |
338 |
Q |
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| T |
17608495 |
acctttctttgcgttcttgaatgtgtttcatttgagacttataatgactctcaatgaatttcttagcagcagcaaccctttccatggttaaggtggaaac |
17608396 |
T |
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| Q |
339 |
aacatcttcatcatcttcaccatcaccaatgggactaatctcatcatgttccaccacttcttcttcatctagcatttcctccttcaccatgtgattattc |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17608395 |
aacatcttcatcatcttcaccatcaccaatgggactaatctcatcatgttccaccacttcttcttcatctaccatttcctccttcaccatgtgattattc |
17608296 |
T |
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| Q |
439 |
tccatatcaaaatccaaaaccccttcctcctcttttctctcttttctcttccttagtttgaaatgattgtgacnnnnnnncaagagaagaacgtgaccct |
538 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
17608295 |
tccataccaaaatccaaaaccccttcctcctcttttctctcttttctcttccttaatttgaaatgattgtgacaaaaaaacaagagaagaacgtgaccct |
17608196 |
T |
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| Q |
539 |
tctnnnnnnnncatacacatatgaagggtaaggagctatgtgtgagacaagtgttgaatgatggttggtttg |
610 |
Q |
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| T |
17608195 |
tctaaaaaaaacatacacatatgaagggtaaggagctatgtgtgagacaagtgttgaatgatggttggtttg |
17608124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 17608718 - 17608628
Alignment:
| Q |
13 |
aatatttcgggttcaatcaatgtgggtgnnnnnnncacggtttggagaggtggcaaaaccaggtgatacttcgcaccaataacatgattat |
103 |
Q |
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| T |
17608718 |
aatatttcgggttcaatcaatgtgggtgaaaaaaacacggtttggagaggtggcaaaaccaggtgatacttcgcaccaataacatgattat |
17608628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 17608603 - 17608542
Alignment:
| Q |
132 |
atttcacaaaaggaggtcatcaa-caacatgcaaagtgaaacaaacagatcttaaccaagac |
192 |
Q |
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| T |
17608603 |
atttcacaaaaggaggtcatcaaacaacatgcaaagtgaaacaaacagatcttaaccaagac |
17608542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 17667327 - 17667292
Alignment:
| Q |
149 |
catcaacaacatgcaaagtgaaacaaacagatcttaa |
185 |
Q |
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| T |
17667327 |
catcaacaacatgcaaagtg-aacaaacagatcttaa |
17667292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 17704835 - 17704800
Alignment:
| Q |
149 |
catcaacaacatgcaaagtgaaacaaacagatcttaa |
185 |
Q |
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| T |
17704835 |
catcaacaacatgcaaagt-aaacaaacagatcttaa |
17704800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 48256479 - 48256410
Alignment:
| Q |
239 |
acctttctttgcgttcttgaatgtgtttcatctgagacttataatgactctcaatgaatttcttagcagc |
308 |
Q |
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| T |
48256479 |
acctctctttccgatcttgaatatttttcatctgtgccctgtaatgattctcaatgaatttcttagcagc |
48256410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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