View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12979_low_1 (Length: 922)
Name: NF12979_low_1
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 688; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 97 - 907
Target Start/End: Original strand, 53424378 - 53425189
Alignment:
| Q |
97 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattgga |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53424378 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattgga |
53424477 |
T |
|
| Q |
197 |
ggattgtggcagcatcttttgttcttaccacggttgctgggaaatcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
296 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53424478 |
ggattgtggcagcatctcttgttcttaccacggttgctgggaagtcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
53424577 |
T |
|
| Q |
297 |
acccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaat |
396 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53424578 |
acccatctcttgcgccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaat |
53424677 |
T |
|
| Q |
397 |
gaatttgggtgacacatcctgcatttaacaaacaataataa-nnnnnnngattaattatgcccagcaaacaagtttaagttaatttattgttatggttat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
53424678 |
gaatttgggtgacacatcctgcatttaacaaacaataataattttttttgattaattatgcccaacaaacaagtttaagttaattaattgttatggttat |
53424777 |
T |
|
| Q |
496 |
gcatgcttacgtaccttgcttcagctaaatctgcagtagttgtcttgacagcctcgccggttaccagtggataatggggagattttgaaagaggggtgaa |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53424778 |
gcatgcttacgtaccttgcttcagctaaatctgcagtagttgtcttgacagcctcgccggttaccagtggataatggggagattttgaaagaggggtgaa |
53424877 |
T |
|
| Q |
596 |
atttatggcttgacccttaacaataacaattatcaaacatgagaaatatatcattgnnnnnnnnnnnnnnnnnnnnnnnnnttgatataccgcagagcgc |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53424878 |
atttatggcttgacccttaacaataacaattatcaaacatgagaaatatatcattgaaaattaaaaaaattaaaaaataaattgatataccgcagagcgc |
53424977 |
T |
|
| Q |
696 |
tatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagca |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53424978 |
tatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagca |
53425077 |
T |
|
| Q |
796 |
tcattaataactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgcaatcgggt |
895 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53425078 |
tcattaataactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgcaatcgggt |
53425177 |
T |
|
| Q |
896 |
cagttgttaagt |
907 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53425178 |
cagttgttaagt |
53425189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 167 - 410
Target Start/End: Original strand, 53431594 - 53431843
Alignment:
| Q |
167 |
atgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaatc---ataatttcttgcctctcctcc |
263 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| ||||||| ||||||||| ||||||||| ||||||||||| || |||| | | | | |||| |
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|
| T |
53431594 |
atgcataccttgttgaattggcgtattggaggagtgtggcaacatcttttgatcttaccactgttgctgggaagtctccataactacgtatcatagctcc |
53431693 |
T |
|
| Q |
264 |
ttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacat |
360 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |||| || | ||| |||| ||||||| ||| |||||||| |
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|
| T |
53431694 |
atcctggtcagtaatatgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaa |
53431793 |
T |
|
| Q |
361 |
atgacaatctttcctttgactttgttcgtatctaatgaatttgggtgaca |
410 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
53431794 |
atgacaatctttcctttgacttttttcttatttaatgaatttgggtgaca |
53431843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 53424066 - 53424158
Alignment:
| Q |
14 |
gagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctgattgaatgtgagtgtaaaataactttatat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
53424066 |
gagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctaattgaatgtgagtgtaaaataactttatat |
53424158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 153 - 411
Target Start/End: Complemental strand, 48374134 - 48373873
Alignment:
| Q |
153 |
taaaaaactttaaaatgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaat---cataattt |
249 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||| ||||| |||| || ||||||||| ||||||||| ||||||||||| | ||||| | |
|
|
| T |
48374134 |
taaaaacctttaaaatgcttacctcgttgaattgacatatttgaggagtgtgacaacatcttttgatcttaccactgttgctgggaagtctgcataaata |
48374035 |
T |
|
| Q |
250 |
cttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatcta |
349 |
Q |
| |
|
||||| | |||| || |||||| |||||||||||||||||||||||||| |||||||||| | |||| || |||| | ||| ||| || |||||| |
|
|
| T |
48374034 |
tttgccacagctccatcctggtcagtaatatgaacaagacctaatccacccgcctcttgcaccgtcctaattttttcatcggttgaataatcaccatcta |
48373935 |
T |
|
| Q |
350 |
tgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgggtgacac |
411 |
Q |
| |
|
||||| || |||||||| ||||||| ||||| ||| ||||||||||| |||| |||||| |
|
|
| T |
48373934 |
ccccatcgcagatgacaatatttccttcaacttttttcttatctaatgaacttggatgacac |
48373873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 701 - 891
Target Start/End: Original strand, 53432124 - 53432314
Alignment:
| Q |
701 |
attgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcatt |
800 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||| |||||||||| ||||| || ||||| ||||| |||| || || ||||||||||||||||| |
|
|
| T |
53432124 |
attgtaccttgataacttctttattacccaagacaacgttggactgaaattcacggtcaatagttgtggcaccaacggttaatatccaaggagcatcatt |
53432223 |
T |
|
| Q |
801 |
aataactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgcaatc |
891 |
Q |
| |
|
| ||| |||| ||||||| | ||| ||||||| ||| |||||||||||| || || |||||||| || ||||||||||| ||||||||| |
|
|
| T |
53432224 |
agtaagtgtacttctctccggtccagcattcccggcagcgcaaaccaccacgatgccgcgctccacggcatggaacgctcctattgcaatc |
53432314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 691 - 884
Target Start/End: Original strand, 53308963 - 53309156
Alignment:
| Q |
691 |
agcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaag |
790 |
Q |
| |
|
|||| |||| ||||||||| ||||||||| |||||| ||||||| |||||||| | ||||| |||||| || |||||| ||||||| || ||||||| |
|
|
| T |
53308963 |
agcgttataaattgtacctcaataactttgccactacctaaaacaacgttggactgcatatcacaatcgatggtagtggctacaacagttaatatccaag |
53309062 |
T |
|
| Q |
791 |
gagcatcattaataactgta-tttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgat |
884 |
Q |
| |
|
|||| ||||||| ||||||| ||| | | || ||| |||||||||||| |||||| |||||||| ||| ||||||| || ||||| |||||||| |
|
|
| T |
53309063 |
gagcgtcattaacaactgtactttgtgt-tggtccatcattcccagcagagcaaacaaccactatgccatgctccacagcatggaatgctccgat |
53309156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 703 - 891
Target Start/End: Complemental strand, 48372558 - 48372370
Alignment:
| Q |
703 |
tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa |
802 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||| ||||||||||| ||||| || ||||||||||| ||||| || || |||||||| |||||||||| |
|
|
| T |
48372558 |
tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacggtcaatagtggtggcagcaaccgttaatatccaaggtgcatcattaa |
48372459 |
T |
|
| Q |
803 |
taactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgcaatc |
891 |
Q |
| |
|
||| ||| || ||||| || ||||||||| |||||||||||| || || |||||| || ||||||||||| ||||||||| |
|
|
| T |
48372458 |
caacagtacttagctctggaccagaattcccagcggagcaaaccaccacgatgccgtgctccatggcatggaacgctccaattgcaatc |
48372370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 506 - 612
Target Start/End: Complemental strand, 48373753 - 48373647
Alignment:
| Q |
506 |
gtaccttgcttcagctaaatctgcagtagttgtcttgacagcctcgccggttaccagtggataatggggagattttgaaagaggggtgaaatttatggct |
605 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||| ||| || || |||| || |||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
48373753 |
gtaccttgcttcagttaagtcagcagtagttgtcttagcagactttccagttatcaatggataatcggcagattttgaaagaggggagaaatttatggct |
48373654 |
T |
|
| Q |
606 |
tgaccct |
612 |
Q |
| |
|
||||||| |
|
|
| T |
48373653 |
tgaccct |
48373647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 703 - 887
Target Start/End: Original strand, 26097502 - 26097686
Alignment:
| Q |
703 |
tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa |
802 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||| || || ||||| ||||| || | ||||||||||| ||||||| |
|
|
| T |
26097502 |
tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacgatcaatggtagtggcagcaaccgttagtatccaaggagcgtcattaa |
26097601 |
T |
|
| Q |
803 |
taactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgc |
887 |
Q |
| |
|
||||||| || ||| | ||| |||||||||| ||||| |||||| || || ||||| || || ||||| ||||| ||||| |
|
|
| T |
26097602 |
caactgtactttgctccggtccagaattcccagcagagcaaatcaccacaatgccgcgctctacagcatggaaagctccaattgc |
26097686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 26096526 - 26096577
Alignment:
| Q |
353 |
catcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgg |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | ||||||||| |||| |
|
|
| T |
26096526 |
catcacatatgacaatctttcctttgacttttttcttgtctaatgaacttgg |
26096577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 810
Target Start/End: Original strand, 53320744 - 53320858
Alignment:
| Q |
696 |
tatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagca |
795 |
Q |
| |
|
||||| |||||||||||| |||||| | ||||||| |||| ||| ||||| |||||||| || || || |||||| |||| || || ||||| |||||| |
|
|
| T |
53320744 |
tatagtttgtaccttgatcactttgccattacccaagacaacattagactggagatcacggtcaattgttgtggctccaacggttaatatccagggagca |
53320843 |
T |
|
| Q |
796 |
tcattaataactgta |
810 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
53320844 |
tcattagaaactgta |
53320858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 53308910 - 53308955
Alignment:
| Q |
157 |
aaactttaaaatgcataccttgttgaattgacatattggaggattg |
202 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
53308910 |
aaactttataatgcttaccttgttgaattgacatattggagtattg |
53308955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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