View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_10 (Length: 457)
Name: NF12979_low_10
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 442
Target Start/End: Complemental strand, 38921815 - 38921384
Alignment:
| Q |
12 |
atgaaccttatgataatgatcaagatagctataatgatcaagatattaataaaaataacatcatttacagaattcaatataaatattgggtttaagtaat |
111 |
Q |
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| T |
38921815 |
atgaaccttatgataatgatcaagatagctataatgatcaagatattaataaaaataacatcatttacagaattcaatataaatattgggtttaagtaat |
38921716 |
T |
|
| Q |
112 |
aaccatcaaatcaaaagcatctttaataaactatttttaatgtttattgattcagtccttcttcttgatcatataatttgtaaaaatatggtttttaatt |
211 |
Q |
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| T |
38921715 |
aaccatcaaatcaaaagcatctttaataaactatttttaatgtttattgattcagtccttcttcttgatcatataatttgtaaaaatatggtttttaatt |
38921616 |
T |
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| Q |
212 |
tgattcattaagagacaactatcattatcaactcaactcaacgaatgcaacaatgtcataagctaaattacgtacctcttagttgatgtctcacaatcat |
311 |
Q |
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| T |
38921615 |
tgattcattaagagacaactatcattatcaactcaactcaacgaatgcaacaatgtcataagctaaattacgtacctcttagttgatgtctcacaatcat |
38921516 |
T |
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| Q |
312 |
gcatacttctttgttttgatgaagatatgtaggcttttgtttgaagatctgatattattatttttaagaagatttgaaaacatga-nnnnnnnnngagag |
410 |
Q |
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| T |
38921515 |
gcatacttctttgttttgatgaagatatgtaggcttttgtttgaagatctgatattattatttttaagaagatttgaaaacatgattttttttttgagag |
38921416 |
T |
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| Q |
411 |
attgtaagacatgattttgaagacccaatttt |
442 |
Q |
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| T |
38921415 |
attgtaagacatgattttgaagacccaatttt |
38921384 |
T |
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