View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12979_low_11 (Length: 452)

Name: NF12979_low_11
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12979_low_11
NF12979_low_11
[»] chr2 (11 HSPs)
chr2 (1-433)||(16147006-16147436)
chr2 (1-372)||(16155592-16155959)
chr2 (4-103)||(7487929-7488028)
chr2 (4-103)||(21736404-21736503)
chr2 (20-103)||(35172437-35172520)
chr2 (381-437)||(16156798-16156854)
chr2 (4-89)||(14920436-14920521)
chr2 (4-103)||(36598267-36598366)
chr2 (158-206)||(6289162-6289210)
chr2 (393-437)||(14914154-14914198)
chr2 (393-437)||(14922380-14922424)
[»] chr3 (11 HSPs)
chr3 (4-103)||(23697193-23697292)
chr3 (4-103)||(23715649-23715748)
chr3 (4-103)||(23734105-23734204)
chr3 (4-103)||(85937-86036)
chr3 (4-103)||(23753768-23753867)
chr3 (156-206)||(23697356-23697406)
chr3 (156-206)||(23715812-23715862)
chr3 (156-206)||(23734268-23734318)
chr3 (156-206)||(24150488-24150538)
chr3 (4-92)||(44041854-44041943)
chr3 (35-87)||(44701759-44701811)
[»] chr8 (8 HSPs)
chr8 (4-103)||(43489092-43489191)
chr8 (4-103)||(42366228-42366327)
chr8 (156-206)||(41965456-41965506)
chr8 (158-206)||(41965235-41965283)
chr8 (156-206)||(29259930-29259980)
chr8 (156-206)||(40264936-40264986)
chr8 (156-206)||(43605023-43605073)
chr8 (4-80)||(14061732-14061808)
[»] chr7 (7 HSPs)
chr7 (4-103)||(12253190-12253289)
chr7 (20-103)||(33474723-33474806)
chr7 (156-206)||(152236-152286)
chr7 (45-87)||(9825243-9825285)
chr7 (45-87)||(10727168-10727210)
chr7 (156-206)||(43057330-43057380)
chr7 (35-87)||(42678008-42678060)
[»] chr4 (4 HSPs)
chr4 (4-103)||(42315085-42315184)
chr4 (20-103)||(56397645-56397728)
chr4 (35-87)||(37370702-37370754)
chr4 (4-80)||(53272095-53272171)
[»] chr5 (3 HSPs)
chr5 (4-103)||(3604253-3604351)
chr5 (35-103)||(378450-378518)
chr5 (35-87)||(27786420-27786472)
[»] chr1 (3 HSPs)
chr1 (4-103)||(39758158-39758256)
chr1 (4-103)||(39763512-39763610)
chr1 (35-87)||(42657931-42657983)
[»] chr6 (3 HSPs)
chr6 (382-437)||(16594993-16595048)
chr6 (382-437)||(16589987-16590042)
chr6 (382-437)||(16605338-16605393)
[»] scaffold0134 (1 HSPs)
scaffold0134 (382-437)||(20116-20172)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 16147006 - 16147436
Alignment:
Q  1 ttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16147006 ttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtgtgagactttttaattaaaatacactcatccaa 16147105  T
Q  101 caaactcttgggattctgtgatactcttccaattttgnnnnnnnnggtacaatactcttccaaattcttttatgttctaatgtgaaaatggcaggttata 200  Q
    ||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  16147106 caaactcttgggattttgtgatactcttccaattttgttttttttggtacaatactcttccaaaatcttttatgttctaatgtgaaaatgacaagttata 16147205  T
Q  201 tcttttaa-tggtttcaaatactagaattgattcattgatccattgtttcttttggttgattactgtacttttgttttaccgtatgttaagaaaaatgca 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16147206 tcttttaaatggtttcaaatactagaattgattcattgatccattgtttcttttggttgattactgtacttttgttttatcgtatgttaagaaaaatgca 16147305  T
Q  300 agtttttcaaatataaattgtttcttacttaacgtcgaaatcttaacttgattcattgtttcaaatactagaa-nnnnnnnnctaattatgctatatcat 398  Q
    ||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||    
T  16147306 agtgtttcaaatataaattgttt----cttaacgtcgaaatcttaacttgattcattgtttcaaatacttgaatttttttttctaattatgctatatcat 16147401  T
Q  399 aattagatagttgattaaactttacacattgatgt 433  Q
    ||||||||||||||| |||||||||||||||||||    
T  16147402 aattagatagttgatcaaactttacacattgatgt 16147436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 16155592 - 16155959
Alignment:
Q  1 ttttaaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaa 100  Q
    ||||||||||| | |||| |||||| |||||| ||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  16155592 ttttaaaatgtttcttggtattgaatattaaatggattttaatgaattcatttatggaattgattgtgtgagactttttaattaaaatacacgcatccaa 16155691  T
Q  101 caaactcttgggattctgtgatactcttccaattttgnnnnnnnnggtacaatactcttccaaattcttttatgttctaatgtgaaaatggcaggttata 200  Q
    |||||||||| |||| |||||||||||| ||||||          ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16155692 caaactcttgagattttgtgatactctttcaatttatttatttttggtacaatactcttccaaattcttttatgttctaatgtgaaaatggccggttata 16155791  T
Q  201 tcttttaatggtttcaaatactagaattgattcattgatccattgtttcttttggttgattactgtacttttgttttaccgtatgttaagaaaaatgcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||    
T  16155792 tcttttaatggtttcaaatactagaattgattcattgatccattgtttcttttagttgattactgtacttttgttttatggtctgttaagaaaaatgcaa 16155891  T
Q  301 gtttttcaaatataaattgtttcttacttaacgtcgaaatcttaacttgattcattgtttcaaatactagaa 372  Q
    || ||||||||||||||||    || ||||||||||||| ||||||||||||||| |||||||||| |||||    
T  16155892 gtgtttcaaatataaattg----ttgcttaacgtcgaaaacttaacttgattcatcgtttcaaatattagaa 16155959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 7488028 - 7487929
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||| |||||||||||||    
T  7488028 taaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaataaactcatccaacaa 7487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 21736503 - 21736404
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||| ||||||| |||||    
T  21736503 taaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaataaactcatctaacaa 21736404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 35172520 - 35172437
Alignment:
Q  20 attgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||| ||||||||    
T  35172520 attgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcttccaacaa 35172437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 16156798 - 16156854
Alignment:
Q  381 ctaattatgctatatcataattagatagttgattaaactttacacattgatgtatat 437  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16156798 ctaattatgctatatcataattagatagttgatcaaactttacacattgatgtatat 16156854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 14920521 - 14920436
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaata 89  Q
    |||||||||| |||| ||||||||||| |  ||||||||| ||||||||| |||||| |||||| |||||||||||| ||||||||    
T  14920521 taaaatgtctcttggtattgaaaattagagagattttaatggattcatttgtggaatagattgtgtgagactttttagttaaaata 14920436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 36598366 - 36598267
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    |||||||||| |||| ||||||||||| |  |||||||||  |||||| | || ||| |||||| |||||||||||| |||||||| |||||||||||||    
T  36598366 taaaatgtctcttggtattgaaaattagagagattttaatgaattcatctgtgaaatagattgtgtgagactttttatttaaaataaactcatccaacaa 36598267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 6289210 - 6289162
Alignment:
Q  158 ttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  6289210 ttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 6289162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 14914154 - 14914198
Alignment:
Q  393 tatcataattagatagttgattaaactttacacattgatgtatat 437  Q
    ||||||||||||||||||||| ||||  |||||| ||||||||||    
T  14914154 tatcataattagatagttgatcaaacactacacaatgatgtatat 14914198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 14922380 - 14922424
Alignment:
Q  393 tatcataattagatagttgattaaactttacacattgatgtatat 437  Q
    ||||||||||  ||||||||| |||| ||||||||||||||||||    
T  14922380 tatcataattcaatagttgatcaaacattacacattgatgtatat 14922424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 23697193 - 23697292
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  23697193 taaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 23697292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 23715649 - 23715748
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  23715649 taaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 23715748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 23734105 - 23734204
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  23734105 taaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 23734204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 85937 - 86036
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||||| | ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  85937 taaaatgtctcgtggtattgaaaattagacggattttactggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 86036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 23753768 - 23753867
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||| ||| |||||||||||| ||||||||| || |||| ||||| |||||||||||| ||||||||||||||||||||||    
T  23753768 taaaatgtctcgtggtattgaaagttagacggattttaatggattcatttgtgtaatgaattgtgtgagactttttagttaaaatacactcatccaacaa 23753867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 23697356 - 23697406
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23697356 tcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23697406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 23715812 - 23715862
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23715812 tcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23715862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 23734268 - 23734318
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23734268 tcttccaaattcttttatgttctattgtaacaatggcaggttatatatttt 23734318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 24150538 - 24150488
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||| ||||    
T  24150538 tcttccaaattcttttctgttctactgtaaaaatggcaggttatatatttt 24150488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 44041943 - 44041854
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaatt-aaaatacac 92  Q
    |||||||||| |||| |||||||| ||    ||||||||||||||| ||| |||||||||||  ||||||||||||| || |||||||||    
T  44041943 taaaatgtctcttggtattgaaaagtatgtagattttaatagattcttttgtggaatggatttcatgagactttttagttgaaaatacac 44041854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 44701759 - 44701811
Alignment:
Q  35 gattttaatagattcatttatggaatggattgtatgagactttttaattaaaa 87  Q
    |||||| || |||||||  |||||||||||| |||||||||||||| ||||||    
T  44701759 gattttgatggattcatggatggaatggattttatgagactttttagttaaaa 44701811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 43489092 - 43489191
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||||||||||| |||||    
T  43489092 taaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatctaacaa 43489191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 42366228 - 42366327
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    |||||||||| |||| ||||||||||| || ||||||||| ||||||||| |||||| |||||| |||||||||||| |||||||| ||||||| |||||    
T  42366228 taaaatgtctcttggtattgaaaattagacagattttaatggattcatttgtggaatagattgtgtgagactttttagttaaaatagactcatctaacaa 42366327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 41965506 - 41965456
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||| ||||    
T  41965506 tcttccaaattcttttctgttctactgtaaaaatggcaggttatatatttt 41965456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 41965283 - 41965235
Alignment:
Q  158 ttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  41965283 ttccaaattcttttctgttctaatgtaacaatggcaggttatatatttt 41965235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 29259980 - 29259930
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  29259980 tcttccaaattcttttctgttctattgtaacaatggcaggttatatatttt 29259930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 40264986 - 40264936
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  40264986 tcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 40264936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 43605073 - 43605023
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  43605073 tcttccaaattcttttttgttctactgtaacaatggcaggttatatatttt 43605023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 14061732 - 14061808
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttttta 80  Q
    ||||||||||||||| ||| |||| || ||  |||||||| ||||| ||||| || |||||| | ||||||||||||    
T  14061732 taaaatgtctgttggtattcaaaagtatacaaattttaatggattcttttatagagtggattttgtgagacttttta 14061808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 12253289 - 12253190
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| ||| |||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  12253289 taaaatgtctcatggtattgaaaattagacgaattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 12253190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 33474723 - 33474806
Alignment:
Q  20 attgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  33474723 attgaaaattagacggattttaattgattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 33474806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 152236 - 152286
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  152236 tcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 152286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 9825285 - 9825243
Alignment:
Q  45 gattcatttatggaatggattgtatgagactttttaattaaaa 87  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  9825285 gattcttttatagaatggattttatgagactttttaattaaaa 9825243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 10727210 - 10727168
Alignment:
Q  45 gattcatttatggaatggattgtatgagactttttaattaaaa 87  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  10727210 gattcttttatagaatggattttatgagactttttaattaaaa 10727168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 43057380 - 43057330
Alignment:
Q  156 tcttccaaattcttttatgttctaatgtgaaaatggcaggttatatctttt 206  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  43057380 tcttccaaattcttttctgttctactgtaacaatggcaggttatatatttt 43057330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 42678060 - 42678008
Alignment:
Q  35 gattttaatagattcatttatggaatggattgtatgagactttttaattaaaa 87  Q
    ||||||||| ||||| ||| | ||||||||| |||||||||||||| ||||||    
T  42678060 gattttaatggattcttttgtagaatggattttatgagactttttagttaaaa 42678008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 42315085 - 42315184
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| |||||||| ||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  42315085 taaaatgtctcgtggtattgaaaattagacggatttcaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 42315184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 56397645 - 56397728
Alignment:
Q  20 attgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||    
T  56397645 attgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaa 56397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 37370754 - 37370702
Alignment:
Q  35 gattttaatagattcatttatggaatggattgtatgagactttttaattaaaa 87  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||| || ||||||    
T  37370754 gattttaatggattcttttatggaatggattttgtgagactttatagttaaaa 37370702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 53272095 - 53272171
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagacttttta 80  Q
    |||||||||| |||| ||| |||| || ||  |||||||| ||||| |||||||| |||||| | ||||||||||||    
T  53272095 taaaatgtctattggtattcaaaagtatacatattttaatggattcttttatggagtggattttgtgagacttttta 53272171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 3604351 - 3604253
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||||  ||| ||||||||||| || ||||||||| |||||||||  | |||||||||| |||||| ||||| ||||||||||||||||||||||    
T  3604351 taaaatgtctcgtggtattgaaaattagacagattttaatggattcatttgcgtaatggattgtgtgagac-ttttagttaaaatacactcatccaacaa 3604253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 378450 - 378518
Alignment:
Q  35 gattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    ||||||||| ||||| | ||||||||||||||| ||| |||||||| || ||||| |||||||||||||    
T  378450 gattttaatggattcttctatggaatggattgtgtgaaactttttagttgaaatatactcatccaacaa 378518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 27786420 - 27786472
Alignment:
Q  35 gattttaatagattcatttatggaatggattgtatgagactttttaattaaaa 87  Q
    ||||||||| ||||| ||||||||||||||| | |||||||||||| ||||||    
T  27786420 gattttaatggattcttttatggaatggattttgtgagactttttagttaaaa 27786472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 39758158 - 39758256
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    |||||||||| |||| ||||||||| |  | ||||||||| |||||||||  |||||||||||| |||||||||||| || |||||||||||||||||||    
T  39758158 taaaatgtcttttggtattgaaaat-atgcagattttaatggattcatttggggaatggattgtgtgagactttttagttgaaatacactcatccaacaa 39758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 39763512 - 39763610
Alignment:
Q  4 taaaatgtctgttgggattgaaaattaaacggattttaatagattcatttatggaatggattgtatgagactttttaattaaaatacactcatccaacaa 103  Q
    |||||||||| |||| ||||||||| |  | ||||||||| |||||||||  |||||||||||| |||||||||||| || |||||||||||||||||||    
T  39763512 taaaatgtcttttggtattgaaaat-atgcagattttaatggattcatttggggaatggattgtgtgagactttttagttgaaatacactcatccaacaa 39763610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 42657931 - 42657983
Alignment:
Q  35 gattttaatagattcatttatggaatggattgtatgagactttttaattaaaa 87  Q
    |||||| || ||||| | ||||||||||||| |||||||||||||| ||||||    
T  42657931 gattttgatggattcttctatggaatggattttatgagactttttagttaaaa 42657983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 16594993 - 16595048
Alignment:
Q  382 taattatgctatatcataattagatagttgattaaactttacacattgatgtatat 437  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  16594993 taattatgctatatcataattagatagttgaccaaacgttacacattgttgtatat 16595048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 16589987 - 16590042
Alignment:
Q  382 taattatgctatatcataattagatagttgattaaactttacacattgatgtatat 437  Q
    |||||||||| ||||||||||||||||||||  |||| |||||||||| |||||||    
T  16589987 taattatgctgtatcataattagatagttgaccaaacgttacacattgttgtatat 16590042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 16605393 - 16605338
Alignment:
Q  382 taattatgctatatcataattagatagttgattaaactttacacattgatgtatat 437  Q
    |||||||||| ||||||||||||||||||||  |||| |||||||||| |||||||    
T  16605393 taattatgctgtatcataattagatagttgaccaaacgttacacattgttgtatat 16605338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 20116 - 20172
Alignment:
Q  382 taattatgctatatcataattagatagttga-ttaaactttacacattgatgtatat 437  Q
    |||||||| | ||||||||||||||||||||   |||| ||||||||||||||||||    
T  20116 taattatgttgtatcataattagatagttgaccaaaacgttacacattgatgtatat 20172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University