View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_12 (Length: 420)
Name: NF12979_low_12
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 3895194 - 3895519
Alignment:
| Q |
23 |
aggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctag |
122 |
Q |
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| T |
3895194 |
aggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctag |
3895293 |
T |
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| Q |
123 |
agattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcagagaagacgggg |
222 |
Q |
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| T |
3895294 |
agattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcggagaagacgggg |
3895393 |
T |
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| Q |
223 |
gaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaa |
322 |
Q |
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| T |
3895394 |
gaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaa |
3895493 |
T |
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| Q |
323 |
agatcaaggagactgttgttggaaag |
348 |
Q |
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| T |
3895494 |
agatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 3895139 - 3895265
Alignment:
| Q |
34 |
gagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgctt |
133 |
Q |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
3895238 |
T |
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| Q |
134 |
atgatgcaaaggaaagaaccaaggaag |
160 |
Q |
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| T |
3895239 |
atgatgccaaggatagaacaaaggaag |
3895265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
370 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
406 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 3895016 - 3895079
Alignment:
| Q |
97 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
160 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
3895079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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