View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_13 (Length: 381)
Name: NF12979_low_13
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 53175387 - 53175046
Alignment:
| Q |
18 |
acagaggcatatgttacaaagcacttaaacaaatcaactcagtgcatttttgttgcatcataaggatatgatctaaaaatcatgtcaggattccctcaac |
117 |
Q |
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| T |
53175387 |
acagaggcatatgttacaaagcacttaaacaaatcaactcagtgcatttttgttgcatcataaggatatgatctaaaaatcatgtcaggattccctcaac |
53175288 |
T |
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| Q |
118 |
aaactctacaactttctgaccaattctcctaaaactgtatttataaacaggttaatattaacagaagtagaaagatacacacaatttattatgaaatcct |
217 |
Q |
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| T |
53175287 |
aaactctacaactttctgaccaattctcctaaaactgtatttataaacagggtaatattaacagaagtagaaagatacacacaatttattatgaaatcct |
53175188 |
T |
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| Q |
218 |
ctcatccatttctttaaaagttgacttgaacatcaaagtattttcatctacaatcctccacaagaatcgtggtattctagtaaaccaaataggtagcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53175187 |
ctcatccatttctttaaaagttgacttgaacatcaaagtattttcatctacaatcctccacaagaatcgtggtattctagtaaaccaaataggtagcaaa |
53175088 |
T |
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| Q |
318 |
gtatgtatgatgtatccttcctgtcattctagcaataggccaactatgt |
366 |
Q |
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| T |
53175087 |
at-------atgtatccttcctgtcattctagcaataggccaactatgt |
53175046 |
T |
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