View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_14 (Length: 380)
Name: NF12979_low_14
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 40404778 - 40404432
Alignment:
| Q |
20 |
caaagcttaacttctgttgatttttcatataataatctcactggtttggttcctggtactggccaatttagttactttaactatacttctttccttggta |
119 |
Q |
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| T |
40404778 |
caaagcttaacttctgttgatttttcatataataatctcactggtttggttcctggtactggccaatttagttactttaactatacttctttccttggta |
40404679 |
T |
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| Q |
120 |
accctgaactttgtggaccttatttgggtccttgcaaagatggtgttgctaatggacctcgtcaacctcatgttaaaggaccactctcttctactgtgaa |
219 |
Q |
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| T |
40404678 |
accctgaactttgtggaccttatttgggtccttgcaaagatggcgttgctaatggacctcgtcaacctcatgttaaaggaccactctcttctactgtgaa |
40404579 |
T |
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| Q |
220 |
gcttttgcttgttgttgggctgcttgtttgctctgctatatttgctgttgtaacgatattcaaagctaggtctttgaaaaaggcgagtgaagctcgtgca |
319 |
Q |
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| T |
40404578 |
gcttttgcttgttgttgggttgcttgtttgctctgctatatttgctgttgtaacgatatttaaagctaggtctttgaaaaaggcgagtgaagctcgtgca |
40404479 |
T |
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| Q |
320 |
tggaaattaaccgcattccaacgattggacttcacggttgatgatgt |
366 |
Q |
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| T |
40404478 |
tggaaattaaccgcattccaacgattggacttcacggttgatgatgt |
40404432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 354
Target Start/End: Original strand, 4978536 - 4978867
Alignment:
| Q |
26 |
ttaacttctgttgatttttcatataataatctcactggtttggttcctggtactggccaatttagttactttaactatacttctttccttggtaaccctg |
125 |
Q |
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| T |
4978536 |
ttaacttctgttgatttttcgtataataatctatctggtttggttcctggcactggtcaatttagttactttaactatacgtctttcttgggaaaccctg |
4978635 |
T |
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| Q |
126 |
aactttgtggaccttatttgggtccttgcaaagatggtgttgctaatggacctcgtcaa---cctcatgttaaaggaccactctcttctactgtgaagct |
222 |
Q |
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| || |||||||||||||||||| |||| |||||||||||| | |||| ||| ||| | ||||||||| || | || ||||||||||||||||| |
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| T |
4978636 |
atctatgtggaccttatttgggtgcttgtaaagatggtgttcttgatggtcctaaccaacttcatcatgttaagggtcatctttcttctactgtgaagct |
4978735 |
T |
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| Q |
223 |
tttgcttgttgttgggctgcttgtttgctctgctatatttgctgttgtaacgatattcaaagctaggtctttgaaaaaggcgagtgaagctcgtgcatgg |
322 |
Q |
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| T |
4978736 |
gttgcttgttattgggttgcttgcatgttcgattgtgtttgctattgcagcaataatcaaggctcggtctttgaagaaggctagtgaggctcgtgcatgg |
4978835 |
T |
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| Q |
323 |
aaattaaccgcattccaacgattggacttcac |
354 |
Q |
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| T |
4978836 |
aaattgacttcattccaacgtttggaattcac |
4978867 |
T |
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