View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_15 (Length: 355)
Name: NF12979_low_15
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 21484338 - 21483993
Alignment:
| Q |
1 |
gtggtggtgattgcatggatgatgttaacattatggatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttca |
100 |
Q |
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| T |
21484338 |
gtggtggtgattgcatggatgatgttaacattatggatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttca |
21484239 |
T |
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| Q |
101 |
aaatgaagatgaaaaccctttagtggatttcacacaagagcaacaagttcaagtgcaagacggatatcaacaa---------gttccgatgatagtgcat |
191 |
Q |
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| T |
21484238 |
aaatgaagatgaaaaccctttagtggatttcactcaagagcaacaagttcaagtgcaagacggatatcaacaacatcaacaagttccgatgatagtgcat |
21484139 |
T |
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| Q |
192 |
gatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacgacgatgtttttgtgtgtgacggtgtaaatggggaagagagtattcaaggag |
291 |
Q |
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| T |
21484138 |
gatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacgacgatgtttttgtgtgtgacggtgtaaatggggaagagagtattcaaggag |
21484039 |
T |
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| Q |
292 |
atgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggt |
337 |
Q |
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| T |
21484038 |
atgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggt |
21483993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 26551591 - 26551516
Alignment:
| Q |
166 |
atcaacaagttccgatgatagtgcatgatgatcgggaaaataaaccgcaacaagtgaatatcgaggagaataacga |
241 |
Q |
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| T |
26551591 |
atcaacaaatttcaatgatagtgcatgatgaaagggaaaataaaccacaacaagtgaatattgaggaaaataacga |
26551516 |
T |
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