View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_16 (Length: 337)
Name: NF12979_low_16
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 5116182 - 5116054
Alignment:
| Q |
18 |
tttcacagacagagaaagtaaacccctctcggtcaaactgatcgacttgatgaatgttggatttacccacttcttccttaagcacgtccatgcaatgttt |
117 |
Q |
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| T |
5116182 |
tttcagagacagagaaagtaaacccctctcggtcaaactgatcgacttgatgaatgttggatttacccacttcttccttaagcgcgtgcatgcaatgttt |
5116083 |
T |
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| Q |
118 |
agtgaatggatcacaagagcctaccatta |
146 |
Q |
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| T |
5116082 |
agtgaatggatcacaagagcctaccatta |
5116054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 5115771 - 5115673
Alignment:
| Q |
230 |
caagaacattatatcccaccattgacagtggctagttatcactcttcaattttgaaagttgtgtaacaaaattacaagtcatcaatcaaatagtattat |
328 |
Q |
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| T |
5115771 |
caagaacattgtatcccaccattgacagtggctagttatcactcttcaattttgaaagttgtgtaacaaaattacaagtcatcaatcaaatagtattat |
5115673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 5115850 - 5115813
Alignment:
| Q |
147 |
taatttaatgcctgctgatttgcctctcgagctatcat |
184 |
Q |
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| T |
5115850 |
taatttaatgcctgctgatttgcctctcgagcaatcat |
5115813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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