View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_2 (Length: 871)
Name: NF12979_low_2
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_2 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 27744315 - 27744539
Alignment:
| Q |
17 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
116 |
Q |
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| T |
27744315 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
27744414 |
T |
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| Q |
117 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
216 |
Q |
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| T |
27744415 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
27744514 |
T |
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| Q |
217 |
attttcttcgccattactacaaagt |
241 |
Q |
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| T |
27744515 |
attttcttcgccattactacaaagt |
27744539 |
T |
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Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 49513337 - 49513388
Alignment:
| Q |
190 |
tagaaaacaacctcactttaaaatctgattttcttcgccattactacaaagt |
241 |
Q |
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| T |
49513337 |
tagaaaacaacctcacttttaaatctgattttcttcgccattactacaaagt |
49513388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 49513261 - 49513321
Alignment:
| Q |
17 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcga |
77 |
Q |
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| T |
49513261 |
gaagaagaagcttatcaatgatcctcggtttgtaggagtgctcacagaccctctttttcga |
49513321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 55250 - 55213
Alignment:
| Q |
525 |
gggttagctagttgaattgaatgtgagcaactgaacaa |
562 |
Q |
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| T |
55250 |
gggttagttagttgaattgaatgtgaacaactgaacaa |
55213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 40917845 - 40917882
Alignment:
| Q |
525 |
gggttagctagttgaattgaatgtgagcaactgaacaa |
562 |
Q |
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| T |
40917845 |
gggttagttagttgaattgaatgtgaacaactgaacaa |
40917882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 6829080 - 6829145
Alignment:
| Q |
364 |
aaatgcaacctgtggaggatcagataaagtgtctctgaagctttatgcgaatttatctcaagtcag |
429 |
Q |
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| T |
6829080 |
aaatacaagctgtggaggatagaatgaagtgtctccgaggctttattcgaatttatctcaagtcag |
6829145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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