View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12979_low_20 (Length: 239)

Name: NF12979_low_20
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12979_low_20
NF12979_low_20
[»] chr1 (1 HSPs)
chr1 (1-182)||(50144282-50144460)
[»] chr6 (2 HSPs)
chr6 (178-223)||(22021958-22022005)
chr6 (181-223)||(2661147-2661191)
[»] chr2 (1 HSPs)
chr2 (178-223)||(44332066-44332113)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 50144460 - 50144282
Alignment:
Q  1 ccaattaacaattattagaaaagaactcttccataaacttnnnnnnnnnnnntgctaatcagtgaaaaaatggttaatgaatcaaatataatattagtat 100  Q
    ||||||||||||||||||||| |||||||| |||||||||            ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  50144460 ccaattaacaattattagaaaggaactctttcataaacttaaaataaaa---tgctaattagtggaaaaatggttaatgaatcaaatataatattagtat 50144364  T
Q  101 attagaagttgtgtagtcaatattattttccatgcagtgtacgtgtattcataccggttgatattatttctgttgtatagta 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||    
T  50144363 attagaagttgtgtagtcaatattattttccgtgcagtgtacgtgtattcacactggttgatattatttctgttgtatagta 50144282  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 22021958 - 22022005
Alignment:
Q  178 tagtatttgagtaaattacacttc--tctcctcaaagatacttgaatt 223  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||    
T  22021958 tagtttttgagtaaattacacttcactctcctcaaagatacttgaatt 22022005  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 2661147 - 2661191
Alignment:
Q  181 tatttgagtaaattacacttctct--cctcaaagatacttgaatt 223  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||    
T  2661147 tatttgagtaaattacacttctctcccctcaaagatgcttgaatt 2661191  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 44332066 - 44332113
Alignment:
Q  178 tagtatttgagtaaattacacttc--tctcctcaaagatacttgaatt 223  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||    
T  44332066 tagtttttgagtaaattacacttcactctcctcaaagatacttgaatt 44332113  T

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