View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_24 (Length: 225)
Name: NF12979_low_24
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 7278899 - 7279113
Alignment:
| Q |
1 |
caccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccct |
100 |
Q |
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| T |
7278899 |
caccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccct |
7278998 |
T |
|
| Q |
101 |
aagagcagaacaatggaagactctaacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatc |
200 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7278999 |
aagagcagaacaatgaaatactctaacagaatccaacctaagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatc |
7279098 |
T |
|
| Q |
201 |
atcttcacaggttct |
215 |
Q |
| |
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|||||||||| |||| |
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| T |
7279099 |
atcttcacagtttct |
7279113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7374940 - 7374726
Alignment:
| Q |
1 |
caccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7374940 |
caccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccct |
7374841 |
T |
|
| Q |
101 |
aagagcagaacaatggaagactctaacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatc |
200 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7374840 |
aagagcagaacaatgaaatactctaacagaatccaacctaagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatc |
7374741 |
T |
|
| Q |
201 |
atcttcacaggttct |
215 |
Q |
| |
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|||||||||| |||| |
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| T |
7374740 |
atcttcacagtttct |
7374726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 5848215 - 5848125
Alignment:
| Q |
124 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctc-cttttcatcatcttcacagtttct |
5848125 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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