View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_4 (Length: 670)
Name: NF12979_low_4
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 20 - 654
Target Start/End: Original strand, 2428923 - 2429557
Alignment:
| Q |
20 |
actatatactgtcgggttattgcatgagttaggcaaggtaaattctgtttgttattactactaccatttatttaaatctccttgtgaaattaatccttgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428923 |
actatatactgtcgggttattgcatgagttaggcaaggtaaattctgtttgttattactactaccatttatttaaatctccttgtgaaattaatccttgg |
2429022 |
T |
|
| Q |
120 |
tggcgtgcttgctgcatggttgttcgaaagtgaactcccattctagaatttaaactgtgtcgtgctaacctctttaatttgctgcgcatatgaattgttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429023 |
tggcgtgcttgctgcatggttgttcgaaagtgaactcccattctagaatttaaactgtgtcgtgctaacctctttaatttgctgcgcatatgaattgttg |
2429122 |
T |
|
| Q |
220 |
gttgctgctgctacgtgttattcttccctgttattcaatttccannnnnnnccctgccgtttaagaattggggttccattcaattggattgttgttgtgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429123 |
gttgctgctgctacgtgttattcttccctgttattcaatttccatttttttccctgccgtttaagaattggggttccattcaattggattgttgttgtgc |
2429222 |
T |
|
| Q |
320 |
actgtagccgtgctagtttcatcaaattggtggataaattgcttgctacagctttgttattcttttgatatattatttttaaatttaatgtaggattttc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429223 |
actgtagccgtgctagtttcatcaaattggtggataaattgcttgctacagctttgttattcttttgatatattatttttaaatttaatgtaggattttc |
2429322 |
T |
|
| Q |
420 |
ataaccaagtggccatggttgatgaggactgtttaccaaaaattttcgatctgttcaacattcaacatcagggtatgcggaaagcagttcgtgggcttct |
519 |
Q |
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| T |
2429323 |
ataaccaagtggccatggttgatgaggactgtttaccaaaaattttcgatctgttcaacattcaacatcagggtatgcggaaagcagttcgtgggcttct |
2429422 |
T |
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| Q |
520 |
cttcaattttgtcaacaataaggtatttttatatgactgaaaatttaaataaactatttttcaatttcaaagcaaggtaaatgatggtcaaannnnnnnn |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429423 |
cttcaattttgtcaacaataaggtatttttatatgactgaaaatttaaataaactatttttcaatttcaaagcaaggtaaatgatggtcaaatttttttt |
2429522 |
T |
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| Q |
620 |
ctcttcccgtgtaggttgtaatatcccagttcatc |
654 |
Q |
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| T |
2429523 |
ctcttcccgtgtaggttgtaatatcccagttcatc |
2429557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 322669 - 322718
Alignment:
| Q |
328 |
cgtgctagtttcatcaaattggtggataaattgcttgctacagctttgtt |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
322669 |
cgtgctagtttcatcaaattggtggataaattgcttgctgcagctttgtt |
322718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 18295096 - 18295034
Alignment:
| Q |
326 |
gccgtgctagtttcatcaaattggtggataaattgcttgctacagctttgttattcttttgat |
388 |
Q |
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| T |
18295096 |
gccgtgctagtttattcaaattggtggatgaattggttgctgcagctttgttattcttttgat |
18295034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 580
Target Start/End: Complemental strand, 1512344 - 1512315
Alignment:
| Q |
551 |
tatgactgaaaatttaaataaactattttt |
580 |
Q |
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| T |
1512344 |
tatgactgaaaatttaaataaactattttt |
1512315 |
T |
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