View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12979_low_7 (Length: 616)

Name: NF12979_low_7
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12979_low_7
NF12979_low_7
[»] chr2 (2 HSPs)
chr2 (195-581)||(36277221-36277607)
chr2 (49-174)||(36277746-36277871)
[»] chr8 (3 HSPs)
chr8 (118-169)||(28979021-28979072)
chr8 (116-170)||(14011086-14011140)
chr8 (116-162)||(18123853-18123899)
[»] chr4 (3 HSPs)
chr4 (110-169)||(36045817-36045876)
chr4 (134-168)||(9302693-9302727)
chr4 (117-169)||(30615991-30616044)
[»] chr5 (6 HSPs)
chr5 (118-171)||(35813289-35813342)
chr5 (117-169)||(13862119-13862171)
chr5 (117-168)||(42553190-42553241)
chr5 (117-163)||(28537129-28537175)
chr5 (117-162)||(3535992-3536037)
chr5 (123-163)||(41405143-41405183)
[»] chr6 (7 HSPs)
chr6 (117-165)||(9443516-9443564)
chr6 (117-168)||(8175990-8176041)
chr6 (117-170)||(10455736-10455789)
chr6 (112-169)||(30833006-30833063)
chr6 (117-170)||(34524869-34524922)
chr6 (118-170)||(12341416-12341468)
chr6 (118-170)||(31639136-31639188)
[»] chr1 (6 HSPs)
chr1 (115-163)||(24119298-24119346)
chr1 (117-172)||(7906372-7906427)
chr1 (120-173)||(7015732-7015785)
chr1 (117-170)||(18003810-18003863)
chr1 (117-170)||(52961130-52961183)
chr1 (117-169)||(9768858-9768910)
[»] scaffold0168 (1 HSPs)
scaffold0168 (117-170)||(34081-34134)
[»] chr3 (2 HSPs)
chr3 (117-170)||(16874238-16874291)
chr3 (121-169)||(3461773-3461821)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 195 - 581
Target Start/End: Complemental strand, 36277607 - 36277221
Alignment:
Q  195 gtttatattaagcttgacataaacaaagtttctaacctatttttattgtccatcacaggatagtcacagatataccaggcacaactgatgctacatttgg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36277607 gtttatattaagcttgacataaacaaagtttctaacctatttttgttgtccatcacaggatagtcacagatataccaggcacaactgatgctacatttgg 36277508  T
Q  295 taagtcctttaatttggtcacatcaattatatgtactacagagtttcttttcactttaattaacatggagtatgatattatatatgttttaattaattga 394  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36277507 taagtcctttaatttggtcacatcaattatatgtactatagagtttcttttcactttaattaacatggagtatgatattatatatgttttaattaattga 36277408  T
Q  395 aaatgaacagggaaagaagtgatgaaatatgaaatgccacgacctaacataggaatccataggtttgtgttccttctttacaagcagaagcgcagacaga 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36277407 aaatgaacagggaaagaagtgatgaaatatgaaatgccacgacctaacataggaatccataggtttgtgttccttctttacaagcagaagcgcagacaga 36277308  T
Q  495 cagtgatgaaaataccaacatcaagagatctctttaacacaaggaaatttgcacaagacaatgacctcgggcctcctgtggctgctg 581  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36277307 cagtgatgaaaataccaacatcaagagatctctttaacacaaagaaatttgcacaagacaatgacctcgggcctcctgtggctgctg 36277221  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 36277871 - 36277746
Alignment:
Q  49 ctttcaataactcatattttaacggaacaaatgtctataatagacaactttaaaaaattacaaattacgtccccgtgagcatagttcaattgacactgac 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||    
T  36277871 ctttcaataactcatattttaacggaacaaatgtctataatagacaactttaaaaaattacaaattacgtccccgtgagcatagctcagttggcagtgac 36277772  T
Q  149 atgcattgttatatgtaggggctgaa 174  Q
    ||||||||||||||||||||| ||||    
T  36277771 atgcattgttatatgtaggggttgaa 36277746  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 28979021 - 28979072
Alignment:
Q  118 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 169  Q
    ||||||||||||||||||| |||| |  ||||||||||||||||||||||||    
T  28979021 tccccgtgagcatagttcagttgatagggacatgcattgttatatgtagggg 28979072  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 14011140 - 14011086
Alignment:
Q  116 cgtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    |||||| |||||||||||||| ||| ||  |||||||||||||||||| ||||||    
T  14011140 cgtccctgtgagcatagttcagttggcagggacatgcattgttatatgcaggggc 14011086  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 18123853 - 18123899
Alignment:
Q  116 cgtccccgtgagcatagttcaattgacactgacatgcattgttatat 162  Q
    ||||||||||||||||||||||||||||  || || |||||||||||    
T  18123853 cgtccccgtgagcatagttcaattgacagggatatacattgttatat 18123899  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 36045817 - 36045876
Alignment:
Q  110 aaattacgtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 169  Q
    |||||| ||||| |||||||||| ||||||||||  |||||||||||||||||| |||||    
T  36045817 aaattatgtcccagtgagcatagctcaattgacagggacatgcattgttatatgcagggg 36045876  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 9302727 - 9302693
Alignment:
Q  134 tcaattgacactgacatgcattgttatatgtaggg 168  Q
    ||||||||||| |||||||||||||||||||||||    
T  9302727 tcaattgacacggacatgcattgttatatgtaggg 9302693  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 30615991 - 30616044
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgac-atgcattgttatatgtagggg 169  Q
    |||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||    
T  30615991 gtccccgtgagcatagctcaattgacatggacaatgcattgttatatgcagggg 30616044  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 35813342 - 35813289
Alignment:
Q  118 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggct 171  Q
    ||||||||||||||| ||| ||||||  |||||||||||||||||| |||||||    
T  35813342 tccccgtgagcatagctcagttgacagggacatgcattgttatatgcaggggct 35813289  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 13862119 - 13862171
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 169  Q
    |||||||||||||||||||| ||||||  || ||||||||||||||| |||||    
T  13862119 gtccccgtgagcatagttcagttgacatggatatgcattgttatatgcagggg 13862171  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 42553241 - 42553190
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggg 168  Q
    |||||||||||||||| ||| ||||||  |||||||||||||||||| ||||    
T  42553241 gtccccgtgagcatagctcagttgacaacgacatgcattgttatatgcaggg 42553190  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 28537129 - 28537175
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatg 163  Q
    |||||||||||||||  ||||||||||  ||||||||||||||||||    
T  28537129 gtccccgtgagcataactcaattgacatggacatgcattgttatatg 28537175  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 3536037 - 3535992
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatat 162  Q
    |||||||||||||||||||| ||| ||  |||||||||||||||||    
T  3536037 gtccccgtgagcatagttcagttggcagggacatgcattgttatat 3535992  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 41405183 - 41405143
Alignment:
Q  123 gtgagcatagttcaattgacactgacatgcattgttatatg 163  Q
    |||||||||||||| ||||||  ||||||||||||||||||    
T  41405183 gtgagcatagttcagttgacagggacatgcattgttatatg 41405143  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 9443564 - 9443516
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgta 165  Q
    |||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  9443564 gtccccgtgagcatagctcagttgatacggacatgcattgttatatgta 9443516  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 8175990 - 8176041
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggg 168  Q
    |||||||||||||||| ||| ||||||  |||||||||||||||||| ||||    
T  8175990 gtccccgtgagcatagctcagttgacagagacatgcattgttatatgcaggg 8176041  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 10455736 - 10455789
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    |||||||||||||||||||| ||| ||   ||||||||||||||||| ||||||    
T  10455736 gtccccgtgagcatagttcagttggcaggaacatgcattgttatatgcaggggc 10455789  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 30833006 - 30833063
Alignment:
Q  112 attacgtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 169  Q
    |||| |||||| ||||||||||||| ||| ||  |||||||||||||||||| |||||    
T  30833006 attaagtccccatgagcatagttcagttggcagggacatgcattgttatatgcagggg 30833063  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 34524869 - 34524922
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  34524869 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 34524922  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 12341416 - 12341468
Alignment:
Q  118 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    ||||||||||||||||||| ||||||   |||| |||| ||||||||||||||    
T  12341416 tccccgtgagcatagttcagttgacaggaacatacattattatatgtaggggc 12341468  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 31639136 - 31639188
Alignment:
Q  118 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    ||||||||||||||  ||| ||||||  |||| ||||||||||||||||||||    
T  31639136 tccccgtgagcataactcagttgacagggacacgcattgttatatgtaggggc 31639188  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 24119298 - 24119346
Alignment:
Q  115 acgtccccgtgagcatagttcaattgacactgacatgcattgttatatg 163  Q
    |||||||||||| ||||||||| ||||||  ||||||||||||||||||    
T  24119298 acgtccccgtgaacatagttcagttgacaaggacatgcattgttatatg 24119346  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 7906427 - 7906372
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggctg 172  Q
    |||||||||||||||||||| |||  |  |||||||||||||||||| ||||||||    
T  7906427 gtccccgtgagcatagttcagttggtagggacatgcattgttatatgcaggggctg 7906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 7015785 - 7015732
Alignment:
Q  120 cccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggctga 173  Q
    ||||||||||||| ||| ||| |   ||||||||||||||||||||||||||||    
T  7015785 cccgtgagcatagctcagttggctgggacatgcattgttatatgtaggggctga 7015732  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 18003810 - 18003863
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  18003810 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 18003863  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 52961183 - 52961130
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  52961183 gtccccgtgagcatagctcagttggcaaggacatgcattgttatatgcaggggc 52961130  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 9768910 - 9768858
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 169  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| |||||    
T  9768910 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcagggg 9768858  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 34134 - 34081
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  34134 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 34081  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 16874291 - 16874238
Alignment:
Q  117 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 170  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  16874291 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 16874238  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 3461821 - 3461773
Alignment:
Q  121 ccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 169  Q
    |||||||||||  ||| ||||||  ||||||||||||||||||||||||    
T  3461821 ccgtgagcataactcagttgacagggacatgcattgttatatgtagggg 3461773  T

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