View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12979_low_9 (Length: 531)
Name: NF12979_low_9
Description: NF12979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12979_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 20 - 514
Target Start/End: Original strand, 7774445 - 7774939
Alignment:
| Q |
20 |
gaagacagagaagcaacggagtagcagtaaaagatcttcctattataagtcaaatgacaatcctcaaaataaagctgacattgcatatcttaagaatatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774445 |
gaagacagagaagcaacggagtagcagtaaaagatcttcctattataagtcaaatgacaatcctcaaaataaagctgacattgcatatcttaagaatatg |
7774544 |
T |
|
| Q |
120 |
aatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaagagaaagatggattcgtcgcagtctgacaaaggcagcgacagtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774545 |
aatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaagagaaagatggattcgtcgcagtctgacaaaggcagcgacagtg |
7774644 |
T |
|
| Q |
220 |
ctcccaagaaatcaagatggaattttacttttagtcttagcttaaccattttgattctatgtctaattctttgcatcattgatgaaatctgttggaagta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774645 |
ctcccaagaaatcaagatggaattttacttttagtcttagcttaaccattttgattctatgtctaattctttgcatcattgatgaaatctgttggaagta |
7774744 |
T |
|
| Q |
320 |
agaatgaaacataaaatcagcaaaatgcataaattcagatatgatggtgaaagatgcaacaccatatcacaattatattcatttcaattcttacatcaac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774745 |
agaatgaaacataaaatcagcaaaatgcataaattcagatatgatggtgaaagatgcaacaccatatcacaattatattcatttcaattcttacatcaac |
7774844 |
T |
|
| Q |
420 |
tttaattcactgtggactaatatttctaagaaatttagatcttattagtgtcaaatttgttagtaactataattgcgttataattactaacaatt |
514 |
Q |
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| T |
7774845 |
tttaattcactgtggactaatatttctaagaaatttagatcttattagtgtcaaatttgttagtaattataattgcgttataattactaacaatt |
7774939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 7779272 - 7779487
Alignment:
| Q |
39 |
agtagcagtaaaagatcttcctattataagtcaaatgacaatcctcaaaataaagctgacattgcatatcttaagaatatgaatggttcaagaagaggtc |
138 |
Q |
| |
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||||| |||||||||||||| | ||| ||||||||| ||||| | |||||||||||| |||||| | | ||||||||||| || ||||||| |||| | |
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| T |
7779272 |
agtagtagtaaaagatcttcatcatatcagtcaaatggcaatcatgaaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggagagatg |
7779371 |
T |
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| Q |
139 |
gatttttggacttaatcggtgcatccccagaaaac-aagagaaa---gatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaa |
234 |
Q |
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||||||| || |||| |||| || ||||||||| |||||||| ||| ||||| |||||||||||||||||| || ||||||||||||||||||||| |
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| T |
7779372 |
catttttgaacataattggtg-attcccagaaaaataagagaaaaaagatcgattcatcgcagtctgacaaaggccgcaacagtgctcccaagaaatcaa |
7779470 |
T |
|
| Q |
235 |
gatggaattttactttt |
251 |
Q |
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||||||||||||||||| |
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| T |
7779471 |
gatggaattttactttt |
7779487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 7768246 - 7768359
Alignment:
| Q |
19 |
tgaagacagagaagcaacggagtagcagtaaaagatcttcctattataagtcaaatgacaatcctcaaaataaagctgacattgcatatcttaagaatat |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||| |||||||||||| |||| | ||| | |||||||| |
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| T |
7768246 |
tgaagacagagaagcaaaggagtagcagtaaaagatcatcatac---aagtcaaatgacaatcctgaaaataaagctgccatttcttatgtgaagaatat |
7768342 |
T |
|
| Q |
119 |
gaatggttcaagaagag |
135 |
Q |
| |
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| |||||||||| |||| |
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| T |
7768343 |
gcatggttcaaggagag |
7768359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 7779521 - 7779583
Alignment:
| Q |
253 |
gtcttagcttaaccattttgattctatgtctaattctttgcatcattgatgaaatctgttgga |
315 |
Q |
| |
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||||| ||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||| |
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| T |
7779521 |
gtctttgcttaaccattttgattatgtttctaattctttgcatcatttatgaaatctgttgga |
7779583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 7768822 - 7768911
Alignment:
| Q |
262 |
taaccattttgattctatgtctaattctttgcatcattgatgaaatctgttggaagtaagaatgaaacataaaatcagcaaaatgcataaattc |
355 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||| | |||||| ||| ||||||||| ||||||||||||| || ||||| |
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| T |
7768822 |
taaccattttgattctatgtctaattccttacatcattgatgaagtatgttgg----tagagtgaaacatagaatcagcaaaatgtatgaattc |
7768911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 7768391 - 7768447
Alignment:
| Q |
179 |
aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaag |
235 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||| |||||||| ||| ||||||||| |
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|
| T |
7768391 |
aaagattgattcatcgcagtctaacaaaggcagcaacagtgcttccaggaaatcaag |
7768447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 12815257 - 12815099
Alignment:
| Q |
78 |
aatcctcaaaataaagctgacattgcatatcttaagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaaga |
177 |
Q |
| |
|
||||||||||||||||||| || |||||| ||| ||||||| ||||||||| |||||| ||||||||||||| | |||| || ||||||||||||| |
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| T |
12815257 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaaga |
12815158 |
T |
|
| Q |
178 |
g---aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatca |
233 |
Q |
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| ||||| | ||| ||||| |||||||||| |||| |||||||| |||||||||| |
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| T |
12815157 |
gaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
12815099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 12752297 - 12752139
Alignment:
| Q |
78 |
aatcctcaaaataaagctgacattgcatatcttaagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaaga |
177 |
Q |
| |
|
||||||||||||||||||| || |||||| ||| ||||||| ||||||||| |||||| ||||||||||||| | || | || ||||||||||||| |
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| T |
12752297 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggcgattctccagaaaacaaga |
12752198 |
T |
|
| Q |
178 |
g---aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatca |
233 |
Q |
| |
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| ||||| | ||| ||||| |||||||||| |||| |||||||| |||||||||| |
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|
| T |
12752197 |
gaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
12752139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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