View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_high_10 (Length: 538)

Name: NF1297_high_10
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_high_10
NF1297_high_10
[»] chr4 (16 HSPs)
chr4 (83-521)||(55614117-55614543)
chr4 (357-525)||(40693245-40693414)
chr4 (409-525)||(47985944-47986060)
chr4 (439-525)||(38990915-38991001)
chr4 (419-525)||(53511289-53511395)
chr4 (357-525)||(52919688-52919857)
chr4 (428-525)||(51888882-51888979)
chr4 (428-525)||(13721119-13721216)
chr4 (476-525)||(16684509-16684558)
chr4 (445-525)||(45659777-45659857)
chr4 (7-49)||(55614767-55614809)
chr4 (476-524)||(44107959-44108007)
chr4 (496-525)||(4047976-4048005)
chr4 (496-525)||(16451774-16451803)
chr4 (496-525)||(38218538-38218567)
chr4 (489-525)||(53269236-53269272)
[»] chr3 (18 HSPs)
chr3 (83-521)||(16480830-16481256)
chr3 (359-525)||(49440532-49440699)
chr3 (358-525)||(33186507-33186675)
chr3 (423-525)||(49327578-49327680)
chr3 (359-525)||(21450425-21450592)
chr3 (356-525)||(47374990-47375160)
chr3 (426-525)||(9126802-9126901)
chr3 (426-525)||(9134909-9135008)
chr3 (425-525)||(48061947-48062047)
chr3 (470-525)||(8486771-8486826)
chr3 (358-525)||(44207853-44208019)
chr3 (411-525)||(9116901-9117013)
chr3 (7-49)||(16480564-16480606)
chr3 (485-525)||(3733790-3733830)
chr3 (485-525)||(26982589-26982629)
chr3 (486-525)||(53393779-53393818)
chr3 (496-525)||(6936314-6936343)
chr3 (496-525)||(41174657-41174686)
[»] chr7 (11 HSPs)
chr7 (352-525)||(38257697-38257871)
chr7 (355-525)||(26791695-26791866)
chr7 (354-525)||(15032806-15032978)
chr7 (411-525)||(37998426-37998540)
chr7 (358-525)||(7255664-7255832)
chr7 (426-521)||(43749460-43749555)
chr7 (357-521)||(108405-108569)
chr7 (409-523)||(35585327-35585441)
chr7 (477-525)||(29332545-29332593)
chr7 (476-523)||(29739466-29739513)
chr7 (496-525)||(25529374-25529403)
[»] chr5 (11 HSPs)
chr5 (356-525)||(1711481-1711651)
chr5 (358-525)||(5344004-5344172)
chr5 (409-525)||(24856177-24856293)
chr5 (434-525)||(32746620-32746711)
chr5 (358-519)||(29047293-29047455)
chr5 (357-525)||(6432674-6432842)
chr5 (483-525)||(27948417-27948459)
chr5 (496-525)||(25977396-25977425)
chr5 (496-525)||(27114142-27114171)
chr5 (496-525)||(37030519-37030548)
chr5 (496-524)||(38679724-38679752)
[»] chr8 (9 HSPs)
chr8 (359-525)||(11991-12158)
chr8 (408-518)||(24830509-24830619)
chr8 (359-525)||(23421214-23421381)
chr8 (476-525)||(42190369-42190418)
chr8 (496-531)||(627218-627253)
chr8 (362-459)||(42132203-42132301)
chr8 (496-525)||(586676-586705)
chr8 (496-525)||(23144373-23144402)
chr8 (497-525)||(4258977-4259005)
[»] chr2 (11 HSPs)
chr2 (358-525)||(5464646-5464814)
chr2 (384-525)||(43333545-43333687)
chr2 (409-525)||(41961449-41961564)
chr2 (445-525)||(15113606-15113686)
chr2 (483-523)||(5939344-5939384)
chr2 (487-525)||(34948315-34948353)
chr2 (485-519)||(15257394-15257428)
chr2 (483-525)||(18963174-18963216)
chr2 (477-525)||(24168333-24168379)
chr2 (483-524)||(34906167-34906207)
chr2 (359-456)||(13278394-13278492)
[»] chr1 (14 HSPs)
chr1 (352-525)||(22335166-22335340)
chr1 (409-525)||(3475530-3475646)
chr1 (358-525)||(12525170-12525337)
chr1 (409-525)||(18272023-18272139)
chr1 (409-525)||(18276677-18276793)
chr1 (410-525)||(10313354-10313469)
chr1 (426-515)||(29946959-29947048)
chr1 (409-525)||(39597967-39598083)
chr1 (409-519)||(14270207-14270315)
chr1 (411-525)||(5750058-5750172)
chr1 (478-525)||(7199741-7199788)
chr1 (466-525)||(10223432-10223491)
chr1 (476-525)||(6605872-6605920)
chr1 (476-525)||(29250521-29250570)
[»] chr6 (6 HSPs)
chr6 (354-525)||(29435796-29435968)
chr6 (355-525)||(480018-480188)
chr6 (409-521)||(34949286-34949398)
chr6 (357-525)||(13036593-13036762)
chr6 (476-523)||(12305348-12305395)
chr6 (496-525)||(9305228-9305257)
[»] scaffold0168 (1 HSPs)
scaffold0168 (476-525)||(12020-12069)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 83 - 521
Target Start/End: Complemental strand, 55614543 - 55614117
Alignment:
Q  83 aaatgtagacgtgaacgccaatcataaaaataaaata-----ccatctcccgtcctttttatattataaactagaacttcatgcatgaactttccaccgg 177  Q
    |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  55614543 aaatgtagacgtgaacgccaatcataaaaataaaataaaataccatctcccgtcctttttatattataaactagaacttcatgcatgaactttccaccag 55614444  T
Q  178 aatatactttttagttttaattatatagtaatttatagcaactaaaaaactcaaaataggactctccaaccatactcgtgaatggatcttgaattataaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55614443 aatatactttttagttttaattatatagtaatttatagcaactaaaaaactcaaaataggactctccaaccatactcgtgaatggatcttgaattataaa 55614344  T
Q  278 cactggtccaaaggggtggctgtcccccaccagtcaagcatgaccaccagtcaagcatgtctgcatgaggaccaaaattagactattactttttccacaa 377  Q
    |||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||| ||||||||      
T  55614343 cactggtccaaaggggtggctgtcccccaccagtcaagcatga-----------------ctgcatgaggaccaaaattagactattac-ttttccaccc 55614262  T
Q  378 tattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttg 476  Q
    | ||||||||||||||| | |||||||| |  ||||||||| ||| ||  |||||||||||  |||| ||||||| |||||||||||||||||||||  |    
T  55614261 tgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgttagtgtttatggaatatgtaatccg 55614162  T
Q  477 gacaactacgatatgaatattttgtgtctttctttgatgtcaagg 521  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  55614161 gacaactacgatataaatattttgtgtctttctttgatgtcaagg 55614117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 357 - 525
Target Start/End: Complemental strand, 40693414 - 40693245
Alignment:
Q  357 agactattactttttccacaatattgtcttctcgcgcgtct-gtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagt 455  Q
    ||||||||| |||| ||||  | ||| ||||||| ||| || ||||||| |  ||||||||||||| || |||||||||||| ||||| ||||||| |||    
T  40693414 agactattatttttcccaccttgttgccttctcgtgcgccttgtaaaaattccataaatacctctggtccggattacgtaatccggaccagattgttagt 40693315  T
Q  456 gtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||  ||||||| ||||  |||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  40693314 gtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttccttgatgtcaaaggtct 40693245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 409 - 525
Target Start/End: Complemental strand, 47986060 - 47985944
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||||||| ||| || |||||||||||| ||||| ||||||| |||| ||  ||||||| ||||  |||||| ||| ||||||||||||||||||||||    
T  47986060 ataaatacccctggtccggattacgtaatccggaccagattgttagtgcttccggaatatataatccggacaaatacaatatgaatattttgtgtctttc 47985961  T
Q  509 tttgatgtcaagggtct 525  Q
    |||||||||||||||||    
T  47985960 tttgatgtcaagggtct 47985944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 439 - 525
Target Start/End: Complemental strand, 38991001 - 38990915
Alignment:
Q  439 cggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||| ||||||| ||| |||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  38991001 cggaccagattgttagtatttatggaatatataattcggacaaatacaatatgaatattttgtgtctttctttgatgtcaagggtct 38990915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 525
Target Start/End: Original strand, 53511289 - 53511395
Alignment:
Q  419 ctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtca 518  Q
    ||||||||||||||||||| ||||| ||||||| |||||||  ||||||| ||||  |||||| |||||||| |||||||||| | ||||||||||||||    
T  53511289 ctgatctggattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatattaatattttgtatttttctttgatgtca 53511388  T
Q  519 agggtct 525  Q
    |||||||    
T  53511389 agggtct 53511395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 357 - 525
Target Start/End: Complemental strand, 52919857 - 52919688
Alignment:
Q  357 agactattactttttccacaatattgtcttctcgcgcg-tctgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagt 455  Q
    ||||||||| ||||| |||  | ||| ||||||||| | |||| ||||| | |||||||| ||||| ||| |||||| |||| ||||  ||||||| | |    
T  52919857 agactattatttttttcactctgttgccttctcgcgtgctctgcaaaaattctataaatatctctggtcttgattacataatccggatcagattgttatt 52919758  T
Q  456 gtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||| ||||||| ||||  |||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  52919757 gtttaaggaatatataatccggacaaatacgatatgaatattttgtgtctttctttaatgttaagggtct 52919688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 428 - 525
Target Start/End: Original strand, 51888882 - 51888979
Alignment:
Q  428 attacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||| ||||| ||||||| |||||||  ||||||| ||||  |||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  51888882 attacgtaatccggacgagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttttgtctttctttgatgtcaatggtct 51888979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 428 - 525
Target Start/End: Original strand, 13721119 - 13721216
Alignment:
Q  428 attacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||| |  || ||||||| |||||||  ||||||| ||||   ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13721119 attacgtaatccaaaccagattgttagtgtttccggaatatataatccagacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 13721216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 16684558 - 16684509
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16684558 ggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 16684509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 525
Target Start/End: Complemental strand, 45659857 - 45659777
Alignment:
Q  445 agattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||| |||||||  ||||||| ||||   ||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  45659857 agattgttagtgttttcggaatatataatccagacaaatacgctatgaatattttgtgtctttctttgatgtcaagggtct 45659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 55614809 - 55614767
Alignment:
Q  7 cctcaaacttacctttcagttcatacatttcgcaacagctcaa 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  55614809 cctcaaacttacctttcagttcatacatttcgcagcagctcaa 55614767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 524
Target Start/End: Original strand, 44107959 - 44108007
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtc 524  Q
    |||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  44107959 ggacaaatacgatatgaatattttgtatctttctttgatgttaagggtc 44108007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Original strand, 4047976 - 4048005
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  4047976 ttttgtgtctttctttgatgtcaagggtct 4048005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Original strand, 16451774 - 16451803
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  16451774 ttttgtgtctttctttgatgtcaagggtct 16451803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 38218567 - 38218538
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  38218567 ttttgtgtctttctttgatgtcaagggtct 38218538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 525
Target Start/End: Original strand, 53269236 - 53269272
Alignment:
Q  489 atgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||| |||||||||||||||||||||| |||||    
T  53269236 atgaatatcttgtgtctttctttgatgtcaatggtct 53269272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 83 - 521
Target Start/End: Original strand, 16480830 - 16481256
Alignment:
Q  83 aaatgtagacgtgaacgccaatcataaaaa-----taaaataccatctcccgtcctttttatattataaactagaacttcatgcatgaactttccaccgg 177  Q
    ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16480830 aaatgtagacgtgaacgccaatcataaaaataaaataaaataccatctcccgtcctttttatattataaactagaacttcatgcatgaactttccaccag 16480929  T
Q  178 aatatactttttagttttaattatatagtaatttatagcaactaaaaaactcaaaataggactctccaaccatactcgtgaatggatcttgaattataaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16480930 aatatactttttagttttaattatatagtaatttatagcaactaaaaaactcaaaataggactctccaaccatactcgtgaatggatcttgaattataaa 16481029  T
Q  278 cactggtccaaaggggtggctgtcccccaccagtcaagcatgaccaccagtcaagcatgtctgcatgaggaccaaaattagactattactttttccacaa 377  Q
    |||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||| ||||||||      
T  16481030 cactggtccaaaggggtggctgtcccccaccagtcaagcatga-----------------ctgcatgaggaccaaaattagactattac-ttttccaccc 16481111  T
Q  378 tattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttg 476  Q
    | ||||||||||||||| | |||||||| |  ||||||||| ||| ||  |||||||||||  |||| ||||||| |||||||||||||||||||||  |    
T  16481112 tgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgttagtgtttatggaatatgtaatccg 16481211  T
Q  477 gacaactacgatatgaatattttgtgtctttctttgatgtcaagg 521  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  16481212 gacaactacgatataaatattttgtgtctttctttgatgtcaagg 16481256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 359 - 525
Target Start/End: Complemental strand, 49440699 - 49440532
Alignment:
Q  359 actattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtgt 457  Q
    |||||||||||||||||  | ||| ||||||||||| | || ||||| || ||||||||||||| || |||||||||||| ||||| ||||||| |||||    
T  49440699 actattactttttccaccctgttgccttctcgcgcgccctgcaaaaatttcataaatacctctggtccggattacgtaatccggaccagattgttagtgt 49440600  T
Q  458 ttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
     |  ||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49440599 atccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 49440532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 525
Target Start/End: Original strand, 33186507 - 33186675
Alignment:
Q  358 gactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    |||||||| |||||||||  | ||| ||||||||||| | || ||||| | |||||||| | ||||||||||||||||||| || || ||||||||||||    
T  33186507 gactattattttttccaccctgttgccttctcgcgcgccctgcaaaaattctataaatatccctgatctggattacgtaatccgaaccagattgtcagtg 33186606  T
Q  457 tttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||  ||||||| ||||  | |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  33186607 tttccggaatatataatccgaacaaatacgatatgaatattttgtgtctttctttgatatcaagggtct 33186675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 423 - 525
Target Start/End: Complemental strand, 49327680 - 49327578
Alignment:
Q  423 tctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaaggg 522  Q
    |||| |||||||||| ||||| ||||||| | |||||  ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  49327680 tctgaattacgtaatccggaccagattgttattgttttcggaatatataattcggacaaatacgatatgaatattttgtgtctttctttgatgtcaaggg 49327581  T
Q  523 tct 525  Q
    |||    
T  49327580 tct 49327578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 359 - 525
Target Start/End: Complemental strand, 21450592 - 21450425
Alignment:
Q  359 actattactttttccacaatattgtcttctcgcgcgtctgtaaaaaattt-ataaatacctctgatctggattacgtaattcggactagattgtcagtgt 457  Q
    |||||||||||||||||  | ||| ||||||||||| ||   |||||||  |||||||  |||| || |||||||||||| |  || ||||||| |||||    
T  21450592 actattactttttccaccctgttgccttctcgcgcgccttgcaaaaattccataaatatatctggtccggattacgtaatccataccagattgttagtgt 21450493  T
Q  458 ttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||   |||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21450492 ttccagaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 21450425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 356 - 525
Target Start/End: Complemental strand, 47375160 - 47374990
Alignment:
Q  356 tagactattactttttccacaatattgtcttctcgcgcgtctgtaaaaaattt-ataaatacctctgatctggattacgtaattcggactagattgtcag 454  Q
    ||||||||||||||| ||||  |  || ||||||||||| |  | |||||||| ||||||||  ||| || | |||||||||| ||||| ||||||| ||    
T  47375160 tagactattacttttcccaccctgatgccttctcgcgcgcccttcaaaaatttcataaatacacctggtccgaattacgtaatccggaccagattgtaag 47375061  T
Q  455 tgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||  ||||||| ||||  |||||| ||||||||||||||||||||||||||||||| || ||||||||    
T  47375060 tgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgacgttaagggtct 47374990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 426 - 525
Target Start/End: Original strand, 9126802 - 9126901
Alignment:
Q  426 ggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||| | || || ||||||| |||||||  ||||||| ||||   | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  9126802 ggattacgtattccgaaccagattgttagtgtttccggaatatataatccagtcaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 9126901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 426 - 525
Target Start/End: Original strand, 9134909 - 9135008
Alignment:
Q  426 ggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||| | || || ||||||| |||||||  ||||||| ||||   | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  9134909 ggattacgtattccgaaccagattgttagtgtttccggaatatataatccagtcaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 9135008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 525
Target Start/End: Original strand, 48061947 - 48062047
Alignment:
Q  425 tggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtc 524  Q
    |||||||| ||||||||   ||||||| ||||||| |||||||| ||||  | || | ||||||||||||||||||| ||||||||||||||||| ||||    
T  48061947 tggattacataattcgggtcagattgttagtgtttttggaatatataatccgaaccaatacgatatgaatattttgtatctttctttgatgtcaatggtc 48062046  T
Q  525 t 525  Q
    |    
T  48062047 t 48062047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 470 - 525
Target Start/End: Complemental strand, 8486826 - 8486771
Alignment:
Q  470 taatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  8486826 taattcggacaaatacaatatgaatattttgtgtctttctttgatgtcaagggtct 8486771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 525
Target Start/End: Complemental strand, 44208019 - 44207853
Alignment:
Q  358 gactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    ||||||||||||| ||||  | ||| ||||||||||| | || ||||| |  ||||||||||||| |  |||||| |||||   ||| ||||||| ||||    
T  44208019 gactattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaatacctctggttcggattatgtaatcttgaccagattgttagtg 44207920  T
Q  457 tttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||  ||||||| || |   ||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  44207919 tttccggaatatatagtccagacaagtacgatatgaatattttgt--ctttctttgatgtcaagggtct 44207853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 9116901 - 9117013
Alignment:
Q  411 aaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctt 510  Q
    ||||||| ||| || |||||||||| | || || ||||||| ||||||| |||||||| ||||  || ||| |||||||||||||  |||||  ||||||    
T  9116901 aaatacccctggtccggattacgtattccgaaccagattgttagtgtttctggaatatataatccggtcaaatacgatatgaata--ttgtgcatttctt 9116998  T
Q  511 tgatgtcaagggtct 525  Q
    |||||||||||||||    
T  9116999 tgatgtcaagggtct 9117013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 16480564 - 16480606
Alignment:
Q  7 cctcaaacttacctttcagttcatacatttcgcaacagctcaa 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  16480564 cctcaaacttacctttcagttcatacatttcgcagcagctcaa 16480606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 3733830 - 3733790
Alignment:
Q  485 cgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  3733830 cgatatgaaatttttgtgtctttctttgatgtcaagggtct 3733790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 26982629 - 26982589
Alignment:
Q  485 cgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  26982629 cgatatgaaatttttgtgtctttctttgatgtcaagggtct 26982589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 525
Target Start/End: Original strand, 53393779 - 53393818
Alignment:
Q  486 gatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  53393779 gatatgaaatttttgtgtctttctttgatgtcaagggtct 53393818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Original strand, 6936314 - 6936343
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  6936314 ttttgtgtctttctttgatgtcaagggtct 6936343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Original strand, 41174657 - 41174686
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  41174657 ttttgtgtctttctttgatgtcaagggtct 41174686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 352 - 525
Target Start/End: Complemental strand, 38257871 - 38257697
Alignment:
Q  352 aaattagactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattg 450  Q
    ||||||||||||||||||||||||  | ||  ||||||||| | | || ||||| |  ||||||||| ||| || |||||||||||||||||| ||||||    
T  38257871 aaattagactattactttttccaccctgtttccttctcgcgtgccctgcaaaaattccataaatacccctggtccggattacgtaattcggaccagattg 38257772  T
Q  451 tcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    | |||||||  ||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38257771 ttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 38257697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 355 - 525
Target Start/End: Original strand, 26791695 - 26791866
Alignment:
Q  355 ttagactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtca 453  Q
    ||||||||||| |||| ||||  | ||| ||||||||||||| || ||||| |  ||||||||| ||| | ||||||||||||| | ||| ||||||| |    
T  26791695 ttagactattatttttcccaccctgttgccttctcgcgcgtcctgcaaaaattccataaatacccctggtttggattacgtaatccagaccagattgtta 26791794  T
Q  454 gtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||  ||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26791795 gtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 26791866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 525
Target Start/End: Complemental strand, 15032978 - 15032806
Alignment:
Q  354 attagactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtc 452  Q
    ||||||||||||| |||| |||  | ||| ||||||| ||| | || ||||| || ||||||||| ||| || |||||||||||| ||||| |||||||     
T  15032978 attagactattacctttttcaccctgttgccttctcgtgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatccggaccagattgtt 15032879  T
Q  453 agtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||   |||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  15032878 agtgtttgcagaatatataatatggacaaatacgacatgaatattttgtgtctttctttgatgtcaagggtct 15032806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 37998426 - 37998540
Alignment:
Q  411 aaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctt 510  Q
    ||||||| ||| |||||||||| |||| ||||||||||||| |||||||  ||||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  37998426 aaatacccctggtctggattacataatccggactagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctt 37998525  T
Q  511 tgatgtcaagggtct 525  Q
    ||||||||| |||||    
T  37998526 tgatgtcaaaggtct 37998540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 358 - 525
Target Start/End: Complemental strand, 7255832 - 7255664
Alignment:
Q  358 gactattactttttccacaatattgtcttctcgcgcg-tctgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    ||||||||||||| ||||  | ||| ||||||||||| |||| ||||| |  ||||||||| ||| |  |||||||||||| ||||| | ||||| ||||    
T  7255832 gactattacttttcccactttgttgccttctcgcgcgctctgcaaaaattccataaatacccctggttcggattacgtaatccggaccaaattgttagtg 7255733  T
Q  457 tttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||  ||||||| ||||   ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  7255732 ttttcggaatatataatccagacaaatacgatatgaatattttgtgtatttctttgatgtcaagggtct 7255664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 426 - 521
Target Start/End: Complemental strand, 43749555 - 43749460
Alignment:
Q  426 ggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagg 521  Q
    ||||||||||||  |||||||||||| |||||||  ||||||| ||||  |||||| ||||||||||||||||||||||||||||| |||||||||    
T  43749555 ggattacgtaatctggactagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttaatgtcaagg 43749460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 357 - 521
Target Start/End: Original strand, 108405 - 108569
Alignment:
Q  357 agactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagt 455  Q
    |||||||||||||| ||||  ||||  | ||||||||| | |||||||| || |||||||||| |  ||  ||||||||||| || || ||||||| |||    
T  108405 agactattacttttcccaccttatttccctctcgcgcgccctgtaaaaatttcataaatacctttagtccagattacgtaatccgaaccagattgttagt 108504  T
Q  456 gtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagg 521  Q
     ||| |||||||| ||||  |||||| ||||||||||||||||||||||||| |||||||||||||    
T  108505 -tttctggaatatataatccggacaaatacgatatgaatattttgtgtctttatttgatgtcaagg 108569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 409 - 523
Target Start/End: Complemental strand, 35585441 - 35585327
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||| ||| ||| || |||||| ||||| | ||| ||||||| ||||||| || |||||  |||  |||||| ||||||||||||||||||||||||||    
T  35585441 ataaacacccctggtccggattatgtaatccagaccagattgttagtgtttctgaaatatacaatccggacaaatacgatatgaatattttgtgtctttc 35585342  T
Q  509 tttgatgtcaagggt 523  Q
    |||||||||||||||    
T  35585341 tttgatgtcaagggt 35585327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 477 - 525
Target Start/End: Complemental strand, 29332593 - 29332545
Alignment:
Q  477 gacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  29332593 gacaaatacgatatgaatattttgtgtctttctttaatgtcaagggtct 29332545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 523
Target Start/End: Complemental strand, 29739513 - 29739466
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggt 523  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  29739513 ggacaaatacgatatgaatattttgtgtctttctttgatgtcgagggt 29739466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 25529403 - 25529374
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  25529403 ttttgtgtctttctttgatgtcaagggtct 25529374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 356 - 525
Target Start/End: Complemental strand, 1711651 - 1711481
Alignment:
Q  356 tagactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcag 454  Q
    ||||||||||||||| |||| || ||| |||||| |||| | || ||||| || ||||||||| ||| || ||||||||||||  |||| ||||||| ||    
T  1711651 tagactattacttttcccaccatgttgccttctcacgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatcaggaccagattgttag 1711552  T
Q  455 tgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||| |||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1711551 tgtttttggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 1711481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 525
Target Start/End: Complemental strand, 5344172 - 5344004
Alignment:
Q  358 gactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    ||||||||||||| |||| || ||| ||||||||||| | || ||||| |  ||||||||| ||| || |||||||||||| ||||| ||||||| ||||    
T  5344172 gactattacttttcccaccatgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtccggattacgtaatccggaccagattgttagtg 5344073  T
Q  457 tttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||   |||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5344072 tttccagaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 5344004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 409 - 525
Target Start/End: Complemental strand, 24856293 - 24856177
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||||||| ||| ||  ||||||||||| ||||| ||||||| |||||||  ||||||| ||||  |||||| |||||||||||||||||||||||||     
T  24856293 ataaataccactggtccagattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttt 24856194  T
Q  509 tttgatgtcaagggtct 525  Q
    |||||||||||||||||    
T  24856193 tttgatgtcaagggtct 24856177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 434 - 525
Target Start/End: Original strand, 32746620 - 32746711
Alignment:
Q  434 taattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||| ||||| ||||||| |||||||  ||||||| |||   |||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32746620 taatccggaccagattgttagtgtttccggaatatataacccggacaaatacgatatgagtattttgtgtctttctttgatgtcaagggtct 32746711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 519
Target Start/End: Complemental strand, 29047455 - 29047293
Alignment:
Q  358 gactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    ||||||||||||| ||||  | ||| ||||||||||| | || ||||| |  | ||||||| ||| || |||||||||| | ||||| ||||||  ||||    
T  29047455 gactattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccaaaaatacccctggtccggattacgtattccggaccagattgctagtg 29047356  T
Q  457 tttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaa 519  Q
    |||  | || || ||||| |||||| ||| |||| ||||||||||||||||||||||||||||    
T  29047355 tttccgaaacatataattcggacaaatacaatataaatattttgtgtctttctttgatgtcaa 29047293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 525
Target Start/End: Complemental strand, 6432842 - 6432674
Alignment:
Q  357 agactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagt 455  Q
    |||||||||||||| ||||  | ||| ||||||||||||| || ||||| || | || |||| ||| | |||||| |||| | ||||| | ||||| |||    
T  6432842 agactattacttttcccaccctcttgccttctcgcgcgtcctgcaaaaatttcaaaactacccctggtatggatttcgta-tccggaccaaattgttagt 6432744  T
Q  456 gtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||  |||| |  ||||   ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  6432743 gtttccggaacagataatccagacaaatacgatatgaatattttgtgtctttcttcgatgtcaagggtct 6432674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 525
Target Start/End: Original strand, 27948417 - 27948459
Alignment:
Q  483 tacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  27948417 tacgatatgaaatttttgtgtctttctttgatgtcaaaggtct 27948459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 25977425 - 25977396
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  25977425 ttttgtgtctttctttgatgtcaagggtct 25977396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Original strand, 27114142 - 27114171
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  27114142 ttttgtgtctttctttgatgtcaagggtct 27114171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 37030548 - 37030519
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  37030548 ttttgtgtctttctttgatgtcaagggtct 37030519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 524
Target Start/End: Complemental strand, 38679752 - 38679724
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtc 524  Q
    |||||||||||||||||||||||||||||    
T  38679752 ttttgtgtctttctttgatgtcaagggtc 38679724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 359 - 525
Target Start/End: Complemental strand, 12158 - 11991
Alignment:
Q  359 actattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtgt 457  Q
    |||||||||||| ||||  | ||| ||||||||||| | || ||||| |  ||||||||| ||| ||||||||||||||| ||||| ||||||| |||||    
T  12158 actattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtctggattacgtaatccggaccagattgttagtgt 12059  T
Q  458 ttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||  ||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12058 ttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 11991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 408 - 518
Target Start/End: Original strand, 24830509 - 24830619
Alignment:
Q  408 tataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtcttt 507  Q
    |||||||||||||| |||| |||||||||||||||| ||||||| ||||||| | |||||| ||||  |||||| |||||||||||||||||||||||||    
T  24830509 tataaatacctctggtctgaattacgtaattcggaccagattgttagtgtttcttgaatatataatccggacaaatacgatatgaatattttgtgtcttt 24830608  T
Q  508 ctttgatgtca 518  Q
    |||||||||||    
T  24830609 ctttgatgtca 24830619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 525
Target Start/End: Complemental strand, 23421381 - 23421214
Alignment:
Q  359 actattactttttccacaatattgtcttctcgcg-cgtctgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtgt 457  Q
    ||||||||||||| ||| |||||| ||||||||| |  ||  ||||| |  ||||||||| ||| ||   ||||||||||  |||| ||||||| |||||    
T  23421381 actattacttttttcaccatattgccttctcgcgtcccctacaaaaattccataaatacccctggtccaaattacgtaatctggaccagattgttagtgt 23421282  T
Q  458 ttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||  | ||||| ||||  | |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  23421281 ttccgaaatatataatccgaacaaatacgatatgaatattttatgtctttctttgatgttaagggtct 23421214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 42190369 - 42190418
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||| ||||||||||||||||||||| | |||||||||||||| ||||    
T  42190369 ggacaaatacgatatgaatattttgtgtttctctttgatgtcaagagtct 42190418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 531
Target Start/End: Original strand, 627218 - 627253
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtctgtgctg 531  Q
    |||||||||||||||||||||||||||||| |||||    
T  627218 ttttgtgtctttctttgatgtcaagggtctttgctg 627253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 459
Target Start/End: Complemental strand, 42132301 - 42132203
Alignment:
Q  362 attactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtgttt 459  Q
    ||||||||||||||  |  || ||||||| ||||| || ||||| || ||||||||| |||||| | ||||||||||| ||| |||||||| |||||||    
T  42132301 attactttttccaccctgctgccttctcgtgcgtcctgcaaaaatttcataaatacccctgatccgaattacgtaatttggattagattgttagtgttt 42132203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 586705 - 586676
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  586705 ttttgtgtctttctttgatgtcaagggtct 586676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 23144402 - 23144373
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  23144402 ttttgtgtctttctttgatgtcaagggtct 23144373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 525
Target Start/End: Complemental strand, 4259005 - 4258977
Alignment:
Q  497 tttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||||||||||||||||||||||    
T  4259005 tttgtgtctttctttgatgtcaagggtct 4258977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 525
Target Start/End: Complemental strand, 5464814 - 5464646
Alignment:
Q  358 gactattactttttccacaatattgtcttctcgcgcg-tctgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    ||||||||||||| ||||  ||||| ||||||||||| |||| ||||| || ||||||||| ||| || |||||| |||||  |||| | ||||| ||||    
T  5464814 gactattacttttcccaccttattgccttctcgcgcgctctgcaaaaatttcataaatacccctggtccggattatgtaatctggaccaaattgttagtg 5464715  T
Q  457 tttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||  ||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5464714 tttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 5464646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 384 - 525
Target Start/End: Original strand, 43333545 - 43333687
Alignment:
Q  384 cttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaac 482  Q
    ||||||||||||| || ||||| |  ||||||||  ||| || |||||||||||| ||| | ||||||| |||||||  ||||||| ||||  ||||||     
T  43333545 cttctcgcgcgtcctgcaaaaattccataaatactcctggtccggattacgtaatccgggccagattgttagtgtttccggaatatataatccggacaaa 43333644  T
Q  483 tacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  43333645 tacaatatgaatattttgtgtctttctttgatgtcaagggtct 43333687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 409 - 525
Target Start/End: Original strand, 41961449 - 41961564
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||||||||||| |||| |||||| |||  |||| ||||||| |||||||  ||||||| ||||  |||||| ||||||||||||||||||| ||||||    
T  41961449 ataaatacctctggtctgaattacg-aatctggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtatctttc 41961547  T
Q  509 tttgatgtcaagggtct 525  Q
    |||||||| ||||||||    
T  41961548 tttgatgttaagggtct 41961564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 525
Target Start/End: Complemental strand, 15113686 - 15113606
Alignment:
Q  445 agattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||| |||||||  |||| || ||||  ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  15113686 agattgttagtgtttccggaacatataatccggaaaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 15113606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 5939384 - 5939344
Alignment:
Q  483 tacgatatgaatattttgtgtctttctttgatgtcaagggt 523  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5939384 tacgatatgaatattttgtgtctttctttgatgtcaagggt 5939344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 487 - 525
Target Start/End: Original strand, 34948315 - 34948353
Alignment:
Q  487 atatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34948315 atatgaatattttgtgtctttctttgatgtcaagggtct 34948353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 519
Target Start/End: Complemental strand, 15257428 - 15257394
Alignment:
Q  485 cgatatgaatattttgtgtctttctttgatgtcaa 519  Q
    |||||||||||||||||||||||||||||||||||    
T  15257428 cgatatgaatattttgtgtctttctttgatgtcaa 15257394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 525
Target Start/End: Original strand, 18963174 - 18963216
Alignment:
Q  483 tacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  18963174 tacgatatgaaatttttgtgtctttctttgatgtcaagggtct 18963216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 24168333 - 24168379
Alignment:
Q  477 gacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  24168333 gacaaatacgatatgaatattttgt--ctttctttgatgtcaagggtct 24168379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 34906167 - 34906207
Alignment:
Q  483 tacgatatgaatattttgtgtctttctttgatgtcaagggtc 524  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  34906167 tacgatatgaa-attttgtgtctttctttgatgtcaagggtc 34906207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 456
Target Start/End: Original strand, 13278394 - 13278492
Alignment:
Q  359 actattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    |||||||||||||||||  |  |||||||||||||| | |||||||  |  | ||||||||||| || ||||||  |||||||||||||||||| ||||    
T  13278394 actattactttttccaccctgctgtcttctcgcgcgccctgtaaaatttacaaaaatacctctggtccggattatataattcggactagattgttagtg 13278492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 352 - 525
Target Start/End: Complemental strand, 22335340 - 22335166
Alignment:
Q  352 aaattagactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattg 450  Q
    ||||| ||||| ||||||| ||||  ||||| ||||||||||| | || ||||| | |||||||||| ||| || |||||||||||| ||||| ||||||    
T  22335340 aaatttgactactacttttcccaccctattgccttctcgcgcgccctgcaaaaattctataaatacccctggtccggattacgtaatccggaccagattg 22335241  T
Q  451 tcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    | |||||||  ||||||| ||||  |||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  22335240 ttagtgtttccggaatatataatccggacaaatacaatatgaatattttctgtctttctttgatgtcaagggtct 22335166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 409 - 525
Target Start/End: Complemental strand, 3475646 - 3475530
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||||||| |||||| |||||||||||| ||||| ||||||| |||||||   |||||| ||||| |||||| ||||||||||||||||| ||||||||    
T  3475646 ataaatacccctgatccggattacgtaatccggaccagattgttagtgtttccagaatatataattcggacaaatacgatatgaatattttttgtctttc 3475547  T
Q  509 tttgatgtcaagggtct 525  Q
    |||||||||||||||||    
T  3475546 tttgatgtcaagggtct 3475530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 358 - 525
Target Start/End: Complemental strand, 12525337 - 12525170
Alignment:
Q  358 gactattactttttccacaatattgtcttctcgcgcgtctgtaaaaaattt-ataaatacctctgatctggattacgtaattcggactagattgtcagtg 456  Q
    ||||||||||||| ||||| | ||| |||||||||| ||  | |||||||  ||||||||| ||| || |||||||||||| ||||| | ||||| ||||    
T  12525337 gactattacttttcccacattgttgccttctcgcgc-tccctgaaaaattccataaatacccctggtccggattacgtaatccggaccaaattgttagtg 12525239  T
Q  457 tttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||  ||||||| ||||   ||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  12525238 tttccggaatatataatccagacaaatacgatatgaatatttggtgtctttctttgatgtcaagggtct 12525170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 409 - 525
Target Start/End: Original strand, 18272023 - 18272139
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    |||||||||  || ||| ||||| ||||| ||||| ||||||| |||||||  ||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  18272023 ataaatacccttggtctagattatgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttc 18272122  T
Q  509 tttgatgtcaagggtct 525  Q
    |||||||||||||||||    
T  18272123 tttgatgtcaagggtct 18272139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 409 - 525
Target Start/End: Original strand, 18276677 - 18276793
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    |||||||||  || ||| ||||| ||||| ||||| ||||||| |||||||  ||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  18276677 ataaatacccttggtctagattatgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttc 18276776  T
Q  509 tttgatgtcaagggtct 525  Q
    |||||||||||||||||    
T  18276777 tttgatgtcaagggtct 18276793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 410 - 525
Target Start/End: Complemental strand, 10313469 - 10313354
Alignment:
Q  410 taaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttct 509  Q
    |||||| | ||| ||| ||||||||||| ||||| ||||||| |||||||  ||||||| ||||  |||||| |||||||||||||||||||||||||||    
T  10313469 taaatatccctggtctagattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttct 10313370  T
Q  510 ttgatgtcaagggtct 525  Q
    ||||||| ||||||||    
T  10313369 ttgatgttaagggtct 10313354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 29947048 - 29946959
Alignment:
Q  426 ggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatg 515  Q
    |||||||||||| ||||| ||||||| |||||||  ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  29947048 ggattacgtaatccggaccagattgttagtgtttccggaatatataattcggacaaatacgatatgaatattttgtgtctttctttgatg 29946959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 409 - 525
Target Start/End: Original strand, 39597967 - 39598083
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||||||| |||| | |||||||||||| ||||| ||||||| |||||||    ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  39597967 ataaatacccctgagccggattacgtaatccggaccagattgttagtgtttccataatatataatctggacaaatacgatatgaatattttgtgtctttc 39598066  T
Q  509 tttgatgtcaagggtct 525  Q
     |||||||||| |||||    
T  39598067 gttgatgtcaaaggtct 39598083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 409 - 519
Target Start/End: Original strand, 14270207 - 14270315
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||||||||||| || |||||||||||| ||||| ||||||| |||||||  ||||||| ||||  |||||| |||||||||||||  |||||||||||    
T  14270207 ataaatacctctggtccggattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaata--ttgtgtctttc 14270304  T
Q  509 tttgatgtcaa 519  Q
    |||||||||||    
T  14270305 tttgatgtcaa 14270315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 5750172 - 5750058
Alignment:
Q  411 aaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctt 510  Q
    ||||||| ||| || |||||||||||| ||||| ||||||| |||||||  | ||||| ||||   ||||| ||||||||||||||||||||||||||||    
T  5750172 aaatacccctggtccggattacgtaatccggaccagattgttagtgtttccgtaatatataatccagacaaatacgatatgaatattttgtgtctttctt 5750073  T
Q  511 tgatgtcaagggtct 525  Q
    |||||| ||||||||    
T  5750072 tgatgtaaagggtct 5750058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 7199788 - 7199741
Alignment:
Q  478 acaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  7199788 acaaatacgatatgaatattttgtgtctttctttgatgtcaatggtct 7199741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 10223491 - 10223432
Alignment:
Q  466 tatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||  |||||| |||||||| |||||||||| |||||||||||||||||| ||||    
T  10223491 tatgtaatccggacaaatacgatataaatattttgtatctttctttgatgtcaagagtct 10223432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 6605920 - 6605872
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||| |||| |||||||||||||| ||||||||||||||||| |||||    
T  6605920 ggacaaatacgttatgaatattttgt-tctttctttgatgtcaatggtct 6605872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 29250521 - 29250570
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||| || ||||||||  ||||||||||||||||||||| ||||||||    
T  29250521 ggacaaatatgatatgaaatttttgtgtctttctttgatgttaagggtct 29250570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 525
Target Start/End: Original strand, 29435796 - 29435968
Alignment:
Q  354 attagactattactttttccacaatattgtcttctcgcgcg-tctgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtc 452  Q
    |||||| ||||||||||  |||  | ||| ||||||||||| |||| ||||| || ||||||||| |||||| ||||||||||||  |||| |||||||     
T  29435796 attagaatattacttttctcaccctgttgccttctcgcgcgctctgcaaaaatttcataaatacccctgatccggattacgtaatctggaccagattgtt 29435895  T
Q  453 agtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||| |||||||| ||||  | |||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  29435896 agtgtttctggaatatataatccgaacaaatacaatatgaatattttgtgtctttctttgatgtcaagagtct 29435968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 355 - 525
Target Start/End: Original strand, 480018 - 480188
Alignment:
Q  355 ttagactattactttttccacaatattgtcttctcgcgcgtctgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcag 454  Q
    ||||||||||| |||| |||| || ||| ||||||||||| ||| ||||| |  ||||||||| ||  || ||||||| |||| ||||| | ||| | ||    
T  480018 ttagactattatttttcccaccatgttgccttctcgcgcgcctgcaaaaattccataaatacccctagtccggattacataatccggaccatattattag 480117  T
Q  455 tgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||  ||||||| ||||  |||||| || |||||| |||||||||||||||||||||||||||||||||    
T  480118 tgttttcggaatatataatccggacaaatatgatatggatattttgtgtctttctttgatgtcaagggtct 480188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 409 - 521
Target Start/End: Original strand, 34949286 - 34949398
Alignment:
Q  409 ataaatacctctgatctggattacgtaattcggactagattgtcagtgtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttc 508  Q
    ||||||||| ||| || |||||||||||| || || ||||||| |||||||  ||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  34949286 ataaatacccctggtccggattacgtaatccgaaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttc 34949385  T
Q  509 tttgatgtcaagg 521  Q
    ||||| |||||||    
T  34949386 tttgacgtcaagg 34949398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 357 - 525
Target Start/End: Original strand, 13036593 - 13036762
Alignment:
Q  357 agactattactttttccacaatattgtcttctcgcgcgtc-tgtaaaaaatttataaatacctctgatctggattacgtaattcggactagattgtcagt 455  Q
    ||||||||| |||| ||||  ||||| ||||||||||| | || ||||| || |||||||||  || ||||||||||||| | ||||| ||||||| |||    
T  13036593 agactattatttttcccaccttattgccttctcgcgcgccatgcaaaaatttcataaatacccttggtctggattacgtattccggaccagattgttagt 13036692  T
Q  456 gtttatggaatatgtaatttggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    ||||  ||| ||| ||||  ||| || ||||||||||||||||||||||||| ||| ||||||| |||||    
T  13036693 gtttccggattatataatccggataaatacgatatgaatattttgtgtctttttttcatgtcaatggtct 13036762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 523
Target Start/End: Complemental strand, 12305395 - 12305348
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggt 523  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||    
T  12305395 ggacaaatacgatatgaaatttttgtgtctttctttgatgtcaagggt 12305348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 9305257 - 9305228
Alignment:
Q  496 ttttgtgtctttctttgatgtcaagggtct 525  Q
    ||||||||||||||||||||||||||||||    
T  9305257 ttttgtgtctttctttgatgtcaagggtct 9305228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 12020 - 12069
Alignment:
Q  476 ggacaactacgatatgaatattttgtgtctttctttgatgtcaagggtct 525  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  12020 ggacaaatacgatatgaatattttgtgtctttatttgatgtcaacggtct 12069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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