View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_106 (Length: 248)
Name: NF1297_high_106
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_106 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32076946 - 32077187
Alignment:
| Q |
1 |
attcttttcaacatgaaaagccaaggtgaaagaaagaaagcaaggcattttaacagc-agtttacctttgacagcgacggaggacgaagatgcgaaaccg |
99 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||||| || |
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| T |
32076946 |
attcttttcaacataaaaagccaaggt-aaagaaagaaagcaaggcattttaacagcgagtttacctttgacagggacggaggacgaagtttcgaaatcg |
32077044 |
T |
|
| Q |
100 |
gtgagacaaaccacgatgaatggtgatcgatcagagcaaatcaaatggaggtaggtgattcaccgaattgagttagggtattgagagaaaaccgaatgga |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||| |
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| T |
32077045 |
gtgagacaaaccacgatgaacggtgatcgatcagagcaaaccaaatcgaggtaggtgattcactgaatcgagttagggttttgagagaaaaccgaatgga |
32077144 |
T |
|
| Q |
200 |
ggtaaaattgaaggagagaagacgttagaatagatgcctatga |
242 |
Q |
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| T |
32077145 |
ggtaaaattgaaggagagaagatgttagaatagatgcatatga |
32077187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 47965066 - 47965182
Alignment:
| Q |
5 |
ttttcaacatgaaaagccaaggtgaaagaaagaaagcaaggcattttaacagc-agtttacctttgacagcgacggaggacgaagatgcgaaaccggtga |
103 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47965066 |
ttttcaacatgaaaagccaaggtgaaagaaagaaaacaaggcattttaaaagcgagtttacctttgacaatgacggaggacgaagatgcgaaaccggtga |
47965165 |
T |
|
| Q |
104 |
gacaaaccacgatgaat |
120 |
Q |
| |
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| T |
47965166 |
gacaaaccacgatgaat |
47965182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 47965179 - 47965257
Alignment:
| Q |
164 |
gaattgagttagggtattgagagaaaaccgaatggaggtaaaattgaaggagagaagacgttagaatagatgcctatga |
242 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47965179 |
gaatcgagttagggttttgagagaaaaccgaatggaggtaaaattgaaggagagaagacgttagaatagatgcctatga |
47965257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 47934785 - 47934676
Alignment:
| Q |
5 |
ttttcaacatgaaaagccaaggtgaaagaaagaaagcaaggcattttaacagc-agtttacctttgacagcgacggaggacgaagatgcgaaaccggtga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
47934785 |
ttttcaacatgaaaagccaaggtgaaagaaagaaagcaaggcattttaacaacgagtttacctttgacagcgacggaggacaaagatgagaaaccggtga |
47934686 |
T |
|
| Q |
104 |
gacaaaccac |
113 |
Q |
| |
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|||||||||| |
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|
| T |
47934685 |
gacaaaccac |
47934676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 27967201 - 27967168
Alignment:
| Q |
5 |
ttttcaacatgaaaagccaaggtgaaagaaagaa |
38 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
27967201 |
ttttcaacatgaaaagccaaggtgaaagaaagaa |
27967168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 12269781 - 12269825
Alignment:
| Q |
198 |
gaggtaaaattgaaggagagaagacgttagaatagatgcctatga |
242 |
Q |
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||||||||||||||||| ||||||||||||||||| | |||||| |
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| T |
12269781 |
gaggtaaaattgaaggaatgaagacgttagaatagaagactatga |
12269825 |
T |
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