View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_107 (Length: 247)
Name: NF1297_high_107
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_107 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 42087932 - 42088172
Alignment:
| Q |
1 |
catagtcataactacgcatttttccatttaaaattcctcaaatattgcttttaagggtttttgttaacattctcagttttgttaatgacagtttctttca |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087932 |
catagtcatagctacgcatttttccatttaaaattcctcaaatattgcttttaagggtttttgttaacattctcagttttgttaatgacagtttctttca |
42088031 |
T |
|
| Q |
101 |
cgttttgaactatccgatccttctcttaatatataaatgtaatgtagtctctaagtagactctagccctccaaacctgttttccctcctcaagttaacta |
200 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42088032 |
cgttttgaactatcc--tctttctcttaatatataaatgtaatgtagtctctaagtagactctagccctccaaacctgttttccctcctgaagttaacta |
42088129 |
T |
|
| Q |
201 |
aatttgcaaagacaaattnnnnnnntgctttcacacctttgtt |
243 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
42088130 |
aatttgcaaagacaaattaaaaaaatgctttcacacctttgtt |
42088172 |
T |
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