View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_11 (Length: 537)
Name: NF1297_high_11
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 30 - 529
Target Start/End: Original strand, 3324018 - 3324523
Alignment:
| Q |
30 |
ctattcaaaacaatgattatcatgctattttttcatgtttgagaattgaaaagcacacctctgcttaattaattcttcaagatgatctgatatgcatcca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324018 |
ctattcaaaacaatgattatcatgctattttttcatgtttgagaattgaaaagcacacctctgcttaattaattcttcaagatgatctgatatgcatcca |
3324117 |
T |
|
| Q |
130 |
ataaacttttcaatgaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatgcaaaaatagcttcgacacttcagatt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3324118 |
ataaacttttcaatgaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatacaaaaatagcttcgacacttcagatt |
3324217 |
T |
|
| Q |
230 |
aaaagcatatcacatgcccgacaagtgttccaacaccgacacaacgcttttacatgtataatcagttctattttctcaaattattactaaagtctgcatg |
329 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
3324218 |
aaaagtatatcacatgtccgacaagtgttccaacaccgacacaacgccgttacatg--taatcagttctattttctcaaattattactgaagtctacatg |
3324315 |
T |
|
| Q |
330 |
ttagtatcagtgtcgtgtttgacgtttgtgccgatgtttaatttattgtcatgtgcataa--------aatacaacaatacttgtatgcaaaatttaatg |
421 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3324316 |
ttagtatcagtgtcgtgtttgacgtttgtgccgatatttaatttattgtcatgtgcataatatgaatcaatacaacaatacttgtatgcaaaatttaatg |
3324415 |
T |
|
| Q |
422 |
gtgaaaagagaatgttacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctc |
521 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324416 |
gtgaaaagagaatattacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctc |
3324515 |
T |
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| Q |
522 |
ttcatctc |
529 |
Q |
| |
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||| |||| |
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| T |
3324516 |
ttcttctc |
3324523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 8013863 - 8013924
Alignment:
| Q |
289 |
aatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtttg |
350 |
Q |
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||||| || |||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
8013863 |
aatcacttatattttttcaaattattactagtgtctacatgttagtatcagtgtcgtgtttg |
8013924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 1116428 - 1116368
Alignment:
| Q |
288 |
taatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtt |
348 |
Q |
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|||||| ||| |||||||||||||||||| || |||| ||||||||| ||||||| ||||| |
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| T |
1116428 |
taatcacttcaattttctcaaattattaccaatgtctacatgttagtgtcagtgttgtgtt |
1116368 |
T |
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