View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_high_13 (Length: 532)

Name: NF1297_high_13
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_high_13
NF1297_high_13
[»] chr5 (23 HSPs)
chr5 (114-458)||(30748867-30749211)
chr5 (114-458)||(30677703-30678047)
chr5 (114-439)||(29871410-29871735)
chr5 (114-439)||(30482628-30482953)
chr5 (161-439)||(30242926-30243204)
chr5 (157-458)||(30435089-30435390)
chr5 (114-458)||(30713957-30714313)
chr5 (157-439)||(30339079-30339361)
chr5 (114-446)||(30399289-30399633)
chr5 (114-439)||(30059581-30059918)
chr5 (161-458)||(29852570-29852879)
chr5 (225-341)||(17418821-17418937)
chr5 (260-336)||(30474742-30474818)
chr5 (210-333)||(30205833-30205956)
chr5 (367-458)||(17418692-17418783)
chr5 (157-235)||(4380925-4381003)
chr5 (373-458)||(30206008-30206093)
chr5 (292-325)||(30522299-30522332)
chr5 (292-325)||(30562639-30562672)
chr5 (295-328)||(30430351-30430384)
chr5 (363-431)||(17982400-17982468)
chr5 (157-252)||(29709670-29709766)
chr5 (363-407)||(30474854-30474898)
[»] chr4 (2 HSPs)
chr4 (114-458)||(20297126-20297482)
chr4 (363-407)||(52351439-52351483)
[»] chr7 (2 HSPs)
chr7 (114-340)||(26706556-26706782)
chr7 (362-446)||(26706816-26706900)
[»] chr1 (4 HSPs)
chr1 (363-439)||(7098897-7098973)
chr1 (213-338)||(7098735-7098860)
chr1 (363-431)||(7582281-7582349)
chr1 (213-329)||(7582395-7582511)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 114 - 458
Target Start/End: Original strand, 30748867 - 30749211
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    ||||||||||||||||| ||||  | ||||||| ||       ||||||||||||||||||||||| |||||||||||||||||||||||   |||||||    
T  30748867 caagtatttcagattattcataccatataatcttagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaaatctcaagt 30748966  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748967 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 30749066  T
Q  314 gcacttcaagtacttgctcagcactaaccgtagatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgc 413  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30749067 gcacttcaagtacttgctcagcactaaccgtagattcctccttgtatacccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgc 30749166  T
Q  414 ttcagcttcagctaaactgccaacatctcttaatcctatgatact 458  Q
    ||||||||||| ||||||||||||||   |||||||| |||||||    
T  30749167 ttcagcttcagataaactgccaacattgtttaatcctttgatact 30749211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 114 - 458
Target Start/End: Complemental strand, 30678047 - 30677703
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    ||||||||||||||||| ||||  ||||||||||||       |||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  30678047 caagtatttcagattattcatacgagataatctcagtctttttagagatggtagtttaccacgtaacggaagccgcacaattttgttgcattcctcaagt 30677948  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  30677947 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggtttaa 30677848  T
Q  314 gcacttcaagtacttgctcagcactaaccgtagatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgc 413  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  30677847 gcacttcaagtacttgctcagcactaaccgtagattcctccttgtatccccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgc 30677748  T
Q  414 ttcagcttcagctaaactgccaacatctcttaatcctatgatact 458  Q
    ||||||||||| ||||||  ||||||   |||||||| |||||||    
T  30677747 ttcagcttcagataaactagcaacattgtttaatcctttgatact 30677703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 114 - 439
Target Start/End: Original strand, 29871410 - 29871735
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    |||||||||||||||||||||||||||||||  |||       ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  29871410 caagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgcaatcctcaagt 29871509  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29871510 ttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 29871609  T
Q  314 gcacttcaagtacttgctcagcactaaccgtagatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgc 413  Q
    || |||| |||||||||||||||||||   |||||| ||  |   ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29871610 gctcttcgagtacttgctcagcactaattatagattcctgttgcgatatccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgc 29871709  T
Q  414 ttcagcttcagctaaactgccaacat 439  Q
    ||||||||||| ||||||||||||||    
T  29871710 ttcagcttcagataaactgccaacat 29871735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 114 - 439
Target Start/End: Original strand, 30482628 - 30482953
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    |||||||||||||||||||||||||||||||  |||       ||||||||||||||||||||||| ||||||||||||||||||||||| | |  ||||    
T  30482628 caagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagt 30482727  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30482728 tcaagagaaattaaattactaagaaggcttatccaacttggtaacgataacccttcattgtaatttattgtcaagcatttgagatttgagtgaggttgaa 30482827  T
Q  314 gcacttcaagtacttgctcagcactaaccgtagatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgc 413  Q
    || ||||||||||||||||||||||||   |||||| ||  | | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482828 gctcttcaagtacttgctcagcactaattatagattcctgttgggatatccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgc 30482927  T
Q  414 ttcagcttcagctaaactgccaacat 439  Q
    ||||||||||| ||| ||||||||||    
T  30482928 ttcagcttcagataacctgccaacat 30482953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 161 - 439
Target Start/End: Complemental strand, 30243204 - 30242926
Alignment:
Q  161 atggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacga 260  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  30243204 atggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaagga 30243105  T
Q  261 taatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttctccttgtat 360  Q
    |||||| |||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||  |  | | ||    
T  30243104 taatccctcatagaaacttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaattatagattcatgttgggat 30243005  T
Q  361 ccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 439  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30243004 atccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacat 30242926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 157 - 458
Target Start/End: Original strand, 30435089 - 30435390
Alignment:
Q  157 agagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttggta 256  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  30435089 agagatggtagtttaccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaataattatccaacttggta 30435188  T
Q  257 acgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttctcctt 356  Q
    |||||||||| |||||| |||||||   |||||| |||||||||||||||||||||||| |||| |||| ||||||||  ||||   |||||| ||  |     
T  30435189 acgataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtaattgctcagatctaattatagattcctgttg 30435288  T
Q  357 gtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatcctatgata 456  Q
      ||  ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||   |||||||| |||||    
T  30435289 cgatatccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgata 30435388  T
Q  457 ct 458  Q
    ||    
T  30435389 ct 30435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 114 - 458
Target Start/End: Complemental strand, 30714313 - 30713957
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    |||||||||||||||||  |||  | ||||||||||       ||||||||||||||||||||||| ||||||||||||||||| ||||| |    ||||    
T  30714313 caagtatttcagattattgataccatataatctcagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgcaatggagaagt 30714214  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
     ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30714213 acaagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 30714114  T
Q  314 gcacttcaagtacttgctcagcactaa----------ccgtagatttc--tccttgtatccccatgacaagcataattcatgaaggtcttttttacccat 401  Q
    || |||| |||||||||||||||||||          |  | || |||  |  |||| |  |||||||||| ||||||||||||||||||||||||||||    
T  30714113 gctcttcgagtacttgctcagcactaacaacaggggtctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccat 30714014  T
Q  402 caaattagccgcttcagcttcagctaaactgccaacatctcttaatcctatgatact 458  Q
    ||||||||||||||||||||||  ||||||||||||||   |||||||| |||||||    
T  30714013 caaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatact 30713957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 157 - 439
Target Start/End: Complemental strand, 30339361 - 30339079
Alignment:
Q  157 agagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttggta 256  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||| | |  ||| | |||||||||||||||||||||||   |||||||||||||||    
T  30339361 agagatggtagtttaccaagtaactgaagcagcacaattttgttgcaattccaaagattaagagaaattaaattactaagaaggcttatccaacttggta 30339262  T
Q  257 acgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttctcctt 356  Q
    ||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||| |||| || ||||||||||||||||   |||||| ||  |     
T  30339261 acgataatccttcatagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttcgagcacttgctcagcactaattatagattcctgttg 30339162  T
Q  357 gtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 439  Q
      ||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  30339161 cgatatccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacat 30339079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 114 - 446
Target Start/End: Original strand, 30399289 - 30399633
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    ||||||||||||||||||||||| |||||||  |||       ||||| ||||||||||||| |||  |||| ||||||| ||| ||||| | | |||||    
T  30399289 caagtatttcagattatccatatcagataattccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgcaattcccaagt 30399388  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  30399389 tcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgaggttgaa 30399488  T
Q  314 gcacttcaagtacttgctcagcactaaccgt----agatt------tc--tccttgtatccccatgacaagcataattcatgaaggtcttttttacccat 401  Q
    ||||||| |||||||||| ||||||||  ||     ||||      ||  |  |||  | ||||||||||||||||||||||||||||||||||||||||    
T  30399489 gcacttcgagtacttgctgagcactaatagttgggggattggtaaatccatagttgctttcccatgacaagcataattcatgaaggtcttttttacccat 30399588  T
Q  402 caaattagccgcttcagcttcagctaaactgccaacatctcttaa 446  Q
    ||||| |||||||| ||||| || ||||||||||| |||| ||||    
T  30399589 caaatcagccgcttgagcttgagataaactgccaaaatcttttaa 30399633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 114 - 439
Target Start/End: Original strand, 30059581 - 30059918
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    |||||||||||||||||||||||||||||||  |||       | |||||||||| ||||||||||  |||||||||||| ||| || ||   || ||||    
T  30059581 caagtatttcagattatccatataagataattccaggttttttaaagatggtagtataccaagtaactgaagccgcacaactttcttacaacgcttaagt 30059680  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    | |||||||| |||||||||||||||||||||||||||||| || |||||||| |||||| || ||||| ||||||| ||||||||||||||||||||||    
T  30059681 ttaagagaaactaaattactaagaataattatccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttgagtgaggttgaa 30059780  T
Q  314 gcacttcaagtacttgctcagcactaaccgtagatttc--------tcc----ttgtatccccatgacaagcataattcatgaaggtcttttttacccat 401  Q
    | |||||||||||||||||| |||||||   ||  |||        |||    |||| |  |||||||||| ||||||||||||||||||||||||||||    
T  30059781 gaacttcaagtacttgctcaacactaacaacagggttctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccat 30059880  T
Q  402 caaattagccgcttcagcttcagctaaactgccaacat 439  Q
    ||||||||||||||||||||||  ||| ||||||||||    
T  30059881 caaattagccgcttcagcttcaaataacctgccaacat 30059918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 161 - 458
Target Start/End: Original strand, 29852570 - 29852879
Alignment:
Q  161 atggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacga 260  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | |  ||||||||||||||||||| |||||||||   |||||||||||||||||||    
T  29852570 atggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaacttggtaacga 29852669  T
Q  261 taatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaa------------ccgtagat 348  Q
    |||||||||||||||||||||   |||||| |||||||||||||||||||||||| |||| |||||||||||| ||  ||            | ||| ||    
T  29852670 taatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcatcatgaatagttgggggctcagtaaat 29852769  T
Q  349 ttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatc 448  Q
       || |||  | |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |    
T  29852770 ccatcattgctttcccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagc 29852869  T
Q  449 ctatgatact 458  Q
    || |||||||    
T  29852870 ctttgatact 29852879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 17418937 - 17418821
Alignment:
Q  225 taaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagt 324  Q
    |||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  17418937 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 17418838  T
Q  325 acttgctcagcactaac 341  Q
    | |||||||||||||||    
T  17418837 agttgctcagcactaac 17418821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 30474742 - 30474818
Alignment:
Q  260 ataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagca 336  Q
    ||||||| |||||||||  |||| |||| |  ||||||||||||||||||||||||| |||||||||||||||||||    
T  30474742 ataatccgtcatagtaaagtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttgctcagca 30474818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 30205833 - 30205956
Alignment:
Q  210 aagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggt 309  Q
    |||| |||||| || ||||||||| |||||| ||||||||||||||||  ||||||  | ||||| |   ||| |||| |  ||||||||||||||||||    
T  30205833 aagtacaagagcaactaaattactgagaatacttatccaacttggtaagaataatctgttatagtgacaaattatcaacctcttgagatttgagtgaggt 30205932  T
Q  310 tgaagcacttcaagtacttgctca 333  Q
    ||||||||||||| || |||||||    
T  30205933 tgaagcacttcaaatagttgctca 30205956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 17418783 - 17418692
Alignment:
Q  367 gacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatcctatgatact 458  Q
    |||||||||||||| || |||||||||||||| ||||| |||||  ||| |||||||| |||| | ||||||||| |||| ||| |||||||    
T  17418783 gacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatact 17418692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 4380925 - 4381003
Alignment:
Q  157 agagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaa 235  Q
    ||||||| ||||||||||||| | ||||||||||||| |||||||||  |   ||||| ||||||||||||||||||||    
T  4380925 agagatgttagtttaccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 458
Target Start/End: Original strand, 30206008 - 30206093
Alignment:
Q  373 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatcctatgatact 458  Q
    |||||||| || ||||||||||||||||||||||| || |||| |||||||| |||||| | ||||||  |||| ||| |||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgatact 30206093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 30522332 - 30522299
Alignment:
Q  292 ttgagatttgagtgaggttgaagcacttcaagta 325  Q
    ||||||||||||||||||||||||||||||||||    
T  30522332 ttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 30562672 - 30562639
Alignment:
Q  292 ttgagatttgagtgaggttgaagcacttcaagta 325  Q
    ||||||||||||||||||||||||||||||||||    
T  30562672 ttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 30430351 - 30430384
Alignment:
Q  295 agatttgagtgaggttgaagcacttcaagtactt 328  Q
    ||||||||||||| ||||||||||||||||||||    
T  30430351 agatttgagtgagattgaagcacttcaagtactt 30430384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 17982400 - 17982468
Alignment:
Q  363 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaact 431  Q
    |||||||| |||||||||||  |||||||||||||| || ||||| ||  ||||| |||||| ||||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaact 17982468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 29709766 - 29709670
Alignment:
Q  157 agagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagag-aaattaaattactaagaataattatccaactt 252  Q
    |||||| |||||||||||| | | ||||| ||||||   || ||||| || | ||||||||||| ||| |||||||||||||||| |||| ||||||    
T  29709766 agagatagtagtttaccaaatgaaggaaggcgcacacaattcttgcaatctttaagttcaagagcaaactaaattactaagaatacttattcaactt 29709670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 30474854 - 30474898
Alignment:
Q  363 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 407  Q
    |||||||||| ||||||| || ||||| |||||||||||||||||    
T  30474854 ccatgacaaggataattcttggaggtcctttttacccatcaaatt 30474898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 114 - 458
Target Start/End: Complemental strand, 20297482 - 20297126
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    ||||||||||||||||| ||||  ||||| | ||||       ||||||||||||||||||| ||| |||||| ||||||||| |||||| | |||||||    
T  20297482 caagtatttcagattatacataccagatattgtcagtttttttagagatggtagtttaccaattaacggaagctgcacaatttcgttgcaattctcaagt 20297383  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    |||| ||||| |||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||  |||||| ||||||||||| ||||||||||    
T  20297382 tcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttgaa 20297283  T
Q  314 gcacttcaagtacttgctcagcactaac------------cgtagatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccat 401  Q
    ||||||| ||||||| ||||||||| ||             ||| |||| || |||  | |||| |||||||||||||||||||||||||||||||||||    
T  20297282 gcacttcgagtactttctcagcacttacagttggtggcttggtaaatttatcattgctttcccaagacaagcataattcatgaaggtcttttttacccat 20297183  T
Q  402 caaattagccgcttcagcttcagctaaactgccaacatctcttaatcctatgatact 458  Q
    |||||| ||  ||| |||||||| || ||||||||||||| |||| ||| |||||||    
T  20297182 caaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatact 20297126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 52351439 - 52351483
Alignment:
Q  363 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 407  Q
    |||||||| |||||||||  | |||||||||||||||||||||||    
T  52351439 ccatgacaggcataattctcggaggtcttttttacccatcaaatt 52351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 114 - 340
Target Start/End: Original strand, 26706556 - 26706782
Alignment:
Q  114 caagtatttcagattatccatataagataatctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagt 213  Q
    |||||||||||||||| ||||| ||||||||  |||       ||||||||||||||||||||||| ||||||||||||| ||| ||||| ||| |||||    
T  26706556 caagtatttcagattaaccatagaagataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgcaatccccaagt 26706655  T
Q  214 tcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaa 313  Q
    |||||||||| |||||||||||||||| ||| |||||||||||| |||||||| || ||||| ||||||  |||||| ||||||||||||||||||||||    
T  26706656 tcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtgaggttgaa 26706755  T
Q  314 gcacttcaagtacttgctcagcactaa 340  Q
    ||||||  ||||  |||||| ||||||    
T  26706756 gcactttgagtagctgctcaacactaa 26706782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 26706816 - 26706900
Alignment:
Q  362 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaa 446  Q
    ||||||||||||||||||  |  |||| |||||| ||||||||||| ||  ||| |||||||| |||||||||||||||| ||||    
T  26706816 cccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaa 26706900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 7098897 - 7098973
Alignment:
Q  363 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 439  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| |||||||| |||||| |||||||    
T  7098897 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacat 7098973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 7098735 - 7098860
Alignment:
Q  213 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttga 312  Q
    |||||||| || ||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||||||    
T  7098735 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 7098834  T
Q  313 agcacttcaagtacttgctcagcact 338  Q
    |||||||||| |||||| ||| ||||    
T  7098835 agcacttcaattacttgatcatcact 7098860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 7582349 - 7582281
Alignment:
Q  363 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaact 431  Q
    ||||||||||||||||||||  |||||||||||||||||||| || ||  ||| |||||||| ||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaact 7582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 7582511 - 7582395
Alignment:
Q  213 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttga 312  Q
    |||||||| || |||||||| |||| |  | ||||||||||| ||  |||| ||||  ||  ||| |||| ||||||  |||||||||| ||||||||||    
T  7582511 ttcaagagtaactaaattaccaagagttctgatccaacttgggaagcataaacctttgtaaaaatctattttcaagctcttgagatttgtgtgaggttga 7582412  T
Q  313 agcacttcaagtacttg 329  Q
    |||||||||||||||||    
T  7582411 agcacttcaagtacttg 7582395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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