View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_high_14 (Length: 519)
Name: NF1297_high_14
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 2491444 - 2491100
Alignment:
| Q |
6 |
agaagcataggacaaattgaattaggaaaggaaccccggatatgcgacctagttcagagacataaaatgctaagagcaattcccattgggaatttctgtg |
105 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2491444 |
agaaacataagacaaattgaattaggaaaggaaccccggatatgcgacctagttcagagacataaaatgctaagagcaattcccattgggagtttctgtg |
2491345 |
T |
|
| Q |
106 |
tttttaagctt---aactaactgttatttgttgtgtttcgccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaac |
202 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491344 |
tttttaagcttcttaactaactgttatttgttgtgtttcgccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaac |
2491245 |
T |
|
| Q |
203 |
ctttgcttaaatgtaaaaatatggatttactccatcaaatctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491244 |
ctttgcttaaatgtaaaaatatggatttactccatcaaatctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgt |
2491145 |
T |
|
| Q |
303 |
gattgaaatcttaaaagcaacatggcatgataagatccacctaat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2491144 |
gattgaaatcttaaaagcaacatggcataataagatccacctaat |
2491100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 2491069 - 2491041
Alignment:
| Q |
368 |
ttaatcatatcattagagaggctcaaatg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2491069 |
ttaatcatatcattagagaggctcaaatg |
2491041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University