View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_17 (Length: 516)
Name: NF1297_high_17
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 30 - 506
Target Start/End: Original strand, 34489084 - 34489560
Alignment:
| Q |
30 |
atgaatccattatcaaccttcagatacagaatcttccaagcaaccaccacaatctcatcattctcaccttttttcctcttcaaccaaaaacgatggaaaa |
129 |
Q |
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| T |
34489084 |
atgaatccattatcaaccttcagatacagaatcttccaagcaaccaccacaatctcatcattctcaccttttttcctcttcaaccaaaaacgatggaaaa |
34489183 |
T |
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| Q |
130 |
aacccaccatttccgcacaaacccgtttagaagaccgaataagagacacccactttgacaaattaacaacccacttcaaaaaactcagccttgttctcaa |
229 |
Q |
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| T |
34489184 |
aacccaccatttcagcacaaacccgtttagaagaccgaataagagacacccactttgacaaattaacaacccacttcaaaaaactcagccttgttctcaa |
34489283 |
T |
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| Q |
230 |
aacccgcaacctcatatcaaatcgaaaacgtggttcttttgtctctcttcaactcatgtcacgctggaaaaacattataggacttaatgtcactgttact |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34489284 |
aacccgcaacctcatatcaaatcgaaaacgtggttcttttgtctctcttcaactcatgtcacgctggaaaaacattacaggacttaatgtcactgttact |
34489383 |
T |
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| Q |
330 |
tcctttcttcaaaaataccctcatgttttttatctgtttgttcatccttttaggagaaacatgtgctgtagaatgacgaaaaagatgaaagagttgatct |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34489384 |
tcctttcttcaaaaataccctcatgttttttatctgtttgttcatccttttaggagaaacatgtgctgtagaatgacgaaaaagatgaaagagttgatct |
34489483 |
T |
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| Q |
430 |
tgttggaagaggttgttgtgagacaacatgaggttgaggttgttaaaagggtgaagaagttgcttatgatgtctgtg |
506 |
Q |
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| T |
34489484 |
tgttggaagaggttgttgtgagacaacatgaggttgaggttgttaaaagggtgaagaagttgcttatgatgtctgtg |
34489560 |
T |
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