View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_20 (Length: 474)
Name: NF1297_high_20
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 29 - 453
Target Start/End: Original strand, 50778729 - 50779128
Alignment:
| Q |
29 |
acaaagaaaaagaaggaagggtgagggtttttataaatactccacatggacggagttttgaaaaatgcatgtggtagaattaagaaaacgattgactcta |
128 |
Q |
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| T |
50778729 |
acaaagaaaaagaaggaagggtgagggtttttataaatactccacatggacggagttttgaaaaatgcatgtggtagaattaagaaaacgattgactcta |
50778828 |
T |
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| Q |
129 |
tagttgggttgggtatgtatggatcgatggatgagagagaattagaggaggcagaaaataaatgatttactagttaactaaggtttgggagattaattaa |
228 |
Q |
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| T |
50778829 |
tagttgggttgggtatgtatggatcgatggatgagagagaattagaggaggcagaaaataaatgatttactagttaactaaggtttgggagattaattaa |
50778928 |
T |
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| Q |
229 |
atgaagtttgtaagtactagtatgactcttttgactttctttgctttgtttgcgtgctcattaggtttatcgtttactgtttctttacttggacatgcta |
328 |
Q |
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| T |
50778929 |
atgaagtttgtaagtactagtatgactcttttgactttctttgctttgtttgcgtgctcattaggtttatcgtttactgt--------ttggacatgcta |
50779020 |
T |
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| Q |
329 |
tgctacccatcctcacaactcaacnnnnnnnctttctttcttgattattattcaccccgtcacattttagatgcccatttaaaaatgatttacataaaaa |
428 |
Q |
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| T |
50779021 |
tgctacccatcctcacaactcaactttttttctttctttcttgattatta----------------ttagatg-ccatttaaaaatgatttacataaaaa |
50779103 |
T |
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