View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_21 (Length: 454)
Name: NF1297_high_21
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 91 - 444
Target Start/End: Complemental strand, 40313963 - 40313610
Alignment:
| Q |
91 |
atctccacaatctattgaaatttttcagcaattcaaaattcagatagcttacaaactacataaataacatcaaaagaaattactaaaaatatccatccac |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40313963 |
atctccacaatctattgaaatttttcagcaattcaaaattcagatagcttacaaactacataaataacatcaaaagaaattactgaaaatatccatccac |
40313864 |
T |
|
| Q |
191 |
atgtcctttttaattaccttagtaggttctaaactaacaagaccacaggctcgagctgccactccgttgccaccttgagaaatggcaaatatcccaaccg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40313863 |
atgtcctttttaattaccttagtaggttctaaactaacaagaccacaggctcgagctgccactccgttgccaccttgagaaatggcaaatatcccaaccg |
40313764 |
T |
|
| Q |
291 |
aatccggaccaggctaacaaacaatggttgaaagtaaatatagtatgagatattagtggaaggaaattaacctccatgtcataatcatcatagtatcaaa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40313763 |
aatccggaccaggctaacaaacaatggttgaaagtaaatatagtatgagatattagtggaaggaaattaacctccatgtcataatcatcacagtatcaaa |
40313664 |
T |
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| Q |
391 |
attgtaaaagcaaaaaccaattgtccactagaaacatgattctctaccttcatc |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40313663 |
attgtaaaagcaaaaaccaattgtccactagaaacatgattctctaccttcatc |
40313610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 21742202 - 21742302
Alignment:
| Q |
205 |
taccttagtaggttctaaactaacaagaccacaggctcgagctgccactccgttgccaccttgagaaatggcaaatatcccaaccgaatccggaccaggc |
304 |
Q |
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|||||| || |||||||||||||||||||| || ||||||||||||||||| | | || ||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
21742202 |
tacctttgtgggttctaaactaacaagaccgcaagctcgagctgccactccactacaactttgtgaaatcgcaaagatcccaaccgaatccggaccaggc |
21742301 |
T |
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| Q |
305 |
t |
305 |
Q |
| |
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| |
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| T |
21742302 |
t |
21742302 |
T |
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