View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_25 (Length: 432)
Name: NF1297_high_25
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 30 - 422
Target Start/End: Original strand, 1836866 - 1837267
Alignment:
| Q |
30 |
agttctgcatacagaggagtccgtaagagaaaatggggtaaatgggtttccgaaattcgtgagcccggcaccaaaacaagaatctggttaggaagtttcg |
129 |
Q |
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| T |
1836866 |
agttctgcatacagaggagtccgtaagagaaaatggggtaaatgggtttccgaaattcgcgagcccggcaccaaaacaagaatctggttaggaagtttcg |
1836965 |
T |
|
| Q |
130 |
agacaccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcc |
229 |
Q |
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| T |
1836966 |
agacaccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcc |
1837065 |
T |
|
| Q |
230 |
tcgtcctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagag------ccaacatgttggcgccaccagataac |
323 |
Q |
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| T |
1837066 |
tcgtcctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaacaccaacatgttggcgccactagataac |
1837165 |
T |
|
| Q |
324 |
aacagtggaacag---gctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaatgattcgccta |
420 |
Q |
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| T |
1837166 |
aacagtggaacaggctgctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaacgattcgccta |
1837265 |
T |
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| Q |
421 |
tg |
422 |
Q |
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|| |
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| T |
1837266 |
tg |
1837267 |
T |
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