View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_26 (Length: 422)
Name: NF1297_high_26
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 400
Target Start/End: Complemental strand, 37108559 - 37108180
Alignment:
| Q |
21 |
gtacctggagtcagtgtcttcggtcaagggtatggaacagcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaatta |
120 |
Q |
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| T |
37108559 |
gtacctggagtcagtgtcttcggtcaaggctatggaacagcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaatta |
37108460 |
T |
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| Q |
121 |
atggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttc |
220 |
Q |
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| T |
37108459 |
atggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttc |
37108360 |
T |
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| Q |
221 |
taaccttttcaatgatagtgttgctattggatctttccatgctgctaagaaaggtattgttgttgtttgctctgctggcaatgatggaccaaaggatgct |
320 |
Q |
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| T |
37108359 |
taaccttttcaatgatagtgttgctattggatctttccatgctgctaagaaaggtattgttgttgtttgctctgctggcaatagtggaccaaatgatgct |
37108260 |
T |
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| Q |
321 |
actgcagaaaatcttgctccttggtatatcacagtcggtgccagtacaatggatagagagttcgctagttatgttcttct |
400 |
Q |
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| T |
37108259 |
actgcatcaaatctagctccttggtatatcacagttggtgccagcacaatggatagagagttccctagttatgttgttct |
37108180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 39188767 - 39188879
Alignment:
| Q |
78 |
aaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatg |
177 |
Q |
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|||||||||||||| | |||||||| || ||||| |||||| ||||| ||| ||||||||||| || || | ||||| |||||| ||||| |||| |
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| T |
39188767 |
aaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatcatggcagcctttgatatggctattcatg |
39188866 |
T |
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| Q |
178 |
atggtgttgatgt |
190 |
Q |
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|||| |||||||| |
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| T |
39188867 |
atggggttgatgt |
39188879 |
T |
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