View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_3 (Length: 631)
Name: NF1297_high_3
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 7 - 602
Target Start/End: Complemental strand, 7963952 - 7963368
Alignment:
| Q |
7 |
tccaagaatatgtattttcaccattatcgacactacgactcaacccttgcttaaacaaaccctcaccaccatcttctacaccctcataagcgcttttcta |
106 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7963952 |
tccaaaaatatgtattttcactgttatcgacactacgactcaacccttgattaaacaaaccctcaccaccatcgcctacaccctcataagcgcttttcta |
7963853 |
T |
|
| Q |
107 |
ccccttctttttacccgacctccatctatcgcatactttgatctcgtcaccttaaaccacgagccaccttgatccgcaaacagtctccagcaccacttcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
7963852 |
ccccttctttttacccgacctccatctatcgcatactttgatctcgtcaccttaaaccac---------tgatccgcaaacagtctccaacaacacttcc |
7963762 |
T |
|
| Q |
207 |
ctatcaaagctaaattcaaatccttaatcctcctaacccccaaatcacatgactcctagtaagacatatttaataaaccgtatatactaagcacaactcg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7963761 |
ctatcaaagctaaattcaaatccttaatcctcctaacccccaaaccacatgactcctaataagacatatttaataaaccgtatatactaagcacaactcg |
7963662 |
T |
|
| Q |
307 |
acaaaccgtatataggttcttactcttccaaacagataatctttttcgaatcttgtctagtaacgattgccaaaaagagagacgatgatgattccctcca |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
7963661 |
acaaaccgtatataggttcttactcttccaaacagataatctttttcgaatcttgtctagt---tattgccaaaaagagagacgatgatgattcactcca |
7963565 |
T |
|
| Q |
407 |
atcagaagacccataaacacaaaagagatatgcccagttttacaatttaaaataactgctgctttcaccaaccataattcaaacacattaactacaacaa |
506 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7963564 |
atcagaagacccatatacacaaaagagatatgcccagttttacaatttaaaatcactgctgctttcaccaaccatgactcaaacacattaactacaacaa |
7963465 |
T |
|
| Q |
507 |
gaataa-ttttatagaaattcactgtcacccgtgaaataagcttaaaaagtaccaagtttgccattagagctctactattaccctaactatgaaatt |
602 |
Q |
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| T |
7963464 |
gaataatttttatagaaattcactgtcacccctgaaataagcttaaaaagtaccaagtttgccattagagctctactattaccctaactatgaaatt |
7963368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 45636517 - 45636457
Alignment:
| Q |
190 |
tctccagcaccacttccctatcaaagctaaattcaaatccttaatcctcctaacccccaaa |
250 |
Q |
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| T |
45636517 |
tctccaacaccacttccctagaagagctaaattaaaatctctaattctcctaacccccaaa |
45636457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 12687263 - 12687210
Alignment:
| Q |
197 |
caccacttccctatcaaagctaaattcaaatccttaatcctcctaacccccaaa |
250 |
Q |
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||||||||||||| |||||||||||| || ||| |||| ||||| ||||||||| |
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| T |
12687263 |
caccacttccctaacaaagctaaattgaattccctaatactccttacccccaaa |
12687210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 23451211 - 23451154
Alignment:
| Q |
191 |
ctccagcaccacttccctatcaaagctaaattcaaatccttaatcctcctaaccccca |
248 |
Q |
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||||||||||||||||||| | ||| ||||| |||||| |||| ||||||||||||| |
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| T |
23451211 |
ctccagcaccacttccctaatacagcaaaattaaaatccctaattctcctaaccccca |
23451154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 2654735 - 2654795
Alignment:
| Q |
190 |
tctccagcaccacttccctatcaaagctaaattcaaatccttaatcctcctaacccccaaa |
250 |
Q |
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|||||| ||||||||||||| | ||||||||| ||||| |||| ||||||||||||||| |
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| T |
2654735 |
tctccaacaccacttccctagaagagctaaattaaaatctctaattctcctaacccccaaa |
2654795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 38737507 - 38737447
Alignment:
| Q |
190 |
tctccagcaccacttccctatcaaagctaaattcaaatccttaatcctcctaacccccaaa |
250 |
Q |
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|||||| ||||||||||||| | ||||||||| ||||| |||| ||||||||||||||| |
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| T |
38737507 |
tctccaacaccacttccctaatagagctaaattaaaatctctaattctcctaacccccaaa |
38737447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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