View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_31 (Length: 401)
Name: NF1297_high_31
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 5837465 - 5837104
Alignment:
| Q |
11 |
cataggacaaatttaacaagcatatactataatattattttttacatgacattttaagatataaataaaccattattagtagttttgtttcttctactca |
110 |
Q |
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| T |
5837465 |
cataggacaaatttaacaagcatatactataatattatttttaacatgacattttaagatataaataaaccattattagtagttttgtttcttctactca |
5837366 |
T |
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| Q |
111 |
tgattgttaagcacattaaaaatttacaatctcaatcctctgaccccaaaacttgtccctaccacaaagcatagccacccacaagatagataatgtcaca |
210 |
Q |
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| T |
5837365 |
tgattgttaagcacattaaaaatttacaatctcaatcctctgaccccaaaacttgtccctaccacaaagcatagccacccacaagatagataatgtcaca |
5837266 |
T |
|
| Q |
211 |
actttcccacaccactagctttctgccacgtgtcatacacagattctctttatactcccaacaccaccaaaaacagcaagaacaatcactgcaaatacaa |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5837265 |
actttcccacaccactagttttctgccacgtgtcatacacagattctctttatactcccaacaccaccaaaaacagcaagaacaatcactgcaaatacaa |
5837166 |
T |
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| Q |
311 |
acttcacctatttgaacttccttaacactgtctgtccaaaactgacaaacaaaccattcatc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5837165 |
acttcacctatttgaacttccttaacactgtctgtccaaaactgacaaacaaaccattcatc |
5837104 |
T |
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