View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_32 (Length: 395)
Name: NF1297_high_32
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 45389511 - 45389864
Alignment:
| Q |
14 |
atatcatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
113 |
Q |
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| T |
45389511 |
atattatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
45389610 |
T |
|
| Q |
114 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagagaaaggaatccacatgctat |
213 |
Q |
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| T |
45389611 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatcacttcaatatcttatgaaatagagaaaagaatccacatgctat |
45389710 |
T |
|
| Q |
214 |
tccctatattgaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaacaggggtcagt |
313 |
Q |
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| T |
45389711 |
tccctatattgaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaacaggggtcagt |
45389810 |
T |
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| Q |
314 |
acagaacctggataaaaactgcaccagtgccatgtcttcttatccagacctggt |
367 |
Q |
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| T |
45389811 |
acagaacctgaataaaaactgcaccagtgcaatgtcttcttatccagacctggt |
45389864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 45374345 - 45374703
Alignment:
| Q |
6 |
gtcgaataatatcatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtcta |
105 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||| || |||||||||||||| |
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| T |
45374345 |
gtcgaatgatatcatttgtaaatattagcttcagagctgacatatgttgtgttttacaatcattctattctaaatatagagctatgcacataatagtcta |
45374444 |
T |
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| Q |
106 |
attaaaagcatagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagagaaaggaatcca |
205 |
Q |
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|| |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |
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| T |
45374445 |
ataaaaagcatagtgctcaaatggatatttttaacatccttcatgtttaatacttcttactcattatttcaatatcctatgaaatagagaaaggaagcca |
45374544 |
T |
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| Q |
206 |
catgctattccctatattgaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaacag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45374545 |
catgctattccctatattgaatttttcaaattgcataagagaaagaaaagtgggcaacagtaaacgggcttacttgacatagttttgtcttgtgtaacag |
45374644 |
T |
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| Q |
306 |
gggtcagtacagaacctggataaaaactgcaccagtgccatgtcttcttatccagacct |
364 |
Q |
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||||||||||||||| || ||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
45374645 |
gggtcagtacagaacttgaataaaaattgcaccagtgcgatgccttcttatccagacct |
45374703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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